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The map label for this gene is ybaO [H]

Identifier: 99082142

GI number: 99082142

Start: 2420610

End: 2421065

Strand: Reverse

Name: ybaO [H]

Synonym: TM1040_2302

Alternate gene names: 99082142

Gene position: 2421065-2420610 (Counterclockwise)

Preceding gene: 99082145

Following gene: 99082141

Centisome position: 75.64

GC content: 60.75

Gene sequence:

>456_bases
ATGCTTGATGACCTCGACCGACGCATATTGCGCAACCTTCAGGATGACCCGACCCAATCGCTTCCGGATCTCGCAGACCG
GCTTGGGCTGACGTCGTCACGGCTGTCGCGCCGTCTTGAAAAACTGCGCGAGGGGGGCGTGCTCTTGGGGGTGCGGGCGG
TGATCGATTGGCAGGCTTTGGGCTACGCGGTGGAAGTGTCGCTGCGGGTGACGCTCGACAAGACCAATCCAAGGGCCTTT
GACGAATTCATCCCGGCGGCGCGCGAGATTCCCGAGGTGCTGGAAATCCAGACATTCCTCGGTCAGGTTGATGTGCGTCT
CAGCGTGATTGCCCGCGATATGGCCCATTATCAGGCGCTTTACCGCGACCACATCCTGCAGCTGCCAAATATCACGGATA
TTGAGGCGCTGATGCATGTGGCGCGGATCACCACCCGCACGGCGCTGCCGCTATGA

Upstream 100 bases:

>100_bases
GAGCATAGGTGGCAGGCCGCGGAATACGAGAGCGATTGCAGTATAAATTCACAAAGATTCGCGATAGCTATTCTCCAAAT
GCTGAATTATCATAATATCT

Downstream 100 bases:

>100_bases
CCGGGCTGGATGCAACCGATCTGGCTCTTTTGCGGGCGCTGTCGCAGGACGCCACCCAGACGGCCGGGGCCTTGGGGCGG
GCGCTTGGCCTCAGCCAGCC

Product: AsnC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 151; Mature: 151

Protein sequence:

>151_residues
MLDDLDRRILRNLQDDPTQSLPDLADRLGLTSSRLSRRLEKLREGGVLLGVRAVIDWQALGYAVEVSLRVTLDKTNPRAF
DEFIPAAREIPEVLEIQTFLGQVDVRLSVIARDMAHYQALYRDHILQLPNITDIEALMHVARITTRTALPL

Sequences:

>Translated_151_residues
MLDDLDRRILRNLQDDPTQSLPDLADRLGLTSSRLSRRLEKLREGGVLLGVRAVIDWQALGYAVEVSLRVTLDKTNPRAF
DEFIPAAREIPEVLEIQTFLGQVDVRLSVIARDMAHYQALYRDHILQLPNITDIEALMHVARITTRTALPL
>Mature_151_residues
MLDDLDRRILRNLQDDPTQSLPDLADRLGLTSSRLSRRLEKLREGGVLLGVRAVIDWQALGYAVEVSLRVTLDKTNPRAF
DEFIPAAREIPEVLEIQTFLGQVDVRLSVIARDMAHYQALYRDHILQLPNITDIEALMHVARITTRTALPL

Specific function: Unknown

COG id: COG1522

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH asnC-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081742, Length=151, Percent_Identity=29.1390728476821, Blast_Score=83, Evalue=1e-17,
Organism=Escherichia coli, GI1787116, Length=132, Percent_Identity=30.3030303030303, Blast_Score=67, Evalue=4e-13,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011008
- InterPro:   IPR013196
- InterPro:   IPR000485
- InterPro:   IPR019885
- InterPro:   IPR019888
- InterPro:   IPR019887
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01037 AsnC_trans_reg; PF08279 HTH_11 [H]

EC number: NA

Molecular weight: Translated: 17165; Mature: 17165

Theoretical pI: Translated: 5.70; Mature: 5.70

Prosite motif: PS00519 HTH_ASNC_1 ; PS50956 HTH_ASNC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLDDLDRRILRNLQDDPTQSLPDLADRLGLTSSRLSRRLEKLREGGVLLGVRAVIDWQAL
CCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHCCEEEEHHHHHHHHHH
GYAVEVSLRVTLDKTNPRAFDEFIPAAREIPEVLEIQTFLGQVDVRLSVIARDMAHYQAL
CEEEEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YRDHILQLPNITDIEALMHVARITTRTALPL
HHHHHHCCCCCCHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MLDDLDRRILRNLQDDPTQSLPDLADRLGLTSSRLSRRLEKLREGGVLLGVRAVIDWQAL
CCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHCCEEEEHHHHHHHHHH
GYAVEVSLRVTLDKTNPRAFDEFIPAAREIPEVLEIQTFLGQVDVRLSVIARDMAHYQAL
CEEEEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YRDHILQLPNITDIEALMHVARITTRTALPL
HHHHHHCCCCCCHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]