| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is 99082116
Identifier: 99082116
GI number: 99082116
Start: 2391780
End: 2392718
Strand: Direct
Name: 99082116
Synonym: TM1040_2276
Alternate gene names: NA
Gene position: 2391780-2392718 (Clockwise)
Preceding gene: 99082114
Following gene: 99082119
Centisome position: 74.72
GC content: 63.68
Gene sequence:
>939_bases ATGACGTTGAAGCTATCTCGCCGCGCGGCTCTTGCCGGTGTTGCGGCTGCCCCGATCGCCGCGGCGGTTGCGGCCCCTGC CCGCGCGGCCGGCCATGAAGCTGCCAAGGCGCCTCTGCATGCGCGTGCGTTCAAGGTGGGCGACTACACGGTTCACAGTC TGCTGGCGGGCAGCACCGGTCGCGACGGTGTGAAGGATATCTTTGGCGGCGGAGCCTCTGATGAGGCGTTTTCCGAAGTC GCGGCAGAGAATTTCATCTCTGACACCAGCGCTCAGTTTTACTTTACGCCGACACTCGTGGACACCGGCTCGGAGAAGAT CCTCTTTGACACCGGCCTCAATGCAGGTGGGATCACAAAAGCGCTGGCGGATGCGGGCGTGACGCCGGAAGAAGTGGATG TGGTGGTGCTGACCCATATGCATGGCGACCACATCGGCGGCATGACCGACGACAGCGGCGCGGCGACCTTTGCCAATGCG CGCTATGTGACGGCAGCGGCGGAATATGACCACTGGACCGCAATGCCCGAAGGCAATGGCGGCGCGGATCGGGTGCGCGC CAAGGTGGCACCGCAGGCCGAGAAGATGAGCTTTATCGACGATGGTGGGGCGGTGGCCTCGGGCGTGACCGGGATGGCAG CCTTTGGGCATACGCCGGGCCATATGGTCTATATGATCGAGAGCGCCGGGCAGCAGCTGCTGCTGACGGCCGATCTGGCC AATCACTATGTGTTCCCCTTTGCCCATCCCGAGTGGCAGACCAGCTTTGACACCGACAAGGATGCGGCCTCGGCCACGCG GCGGCGGGTGCTGGAAATGCTCGCTGACAGCCGCACGCCAATGATCGGCTATCACATGCCCTTCCCTGCCGCCGGCTATG TCGAGCGGCGCGGCGAAGGGTTCCGTTTTGTGCCGGTCAGCTATCAGATGATGGGCTAA
Upstream 100 bases:
>100_bases GGGTCGGAGACCCTGCACGCATTCGTGATCTAAGTTACACGGATTTCGAGCGCGGGCGCTCTAGTTTCACCACCTATCAA ACAACTGGGAGACTGACATC
Downstream 100 bases:
>100_bases GCGCCAAAACGACTGAGGCGGAAGGGGCGCGGATCCACGATGGGCGCGTCCCCCGTCACCAGATCCGCCGTCAACCGACC GGCCCCGGGGCCAAGGCCAA
Product: twin-arginine translocation pathway signal
Products: NA
Alternate protein names: Beta-Lactamase Domain Protein; Metallo-Beta-Lactamase Family Protein; Metallo-Beta-Lactamase Superfamily Protein; Beta-Lactamase-Like; Twin-Arginine Translocation Pathway Signal; Zn-Dependent Hydrolase; Beta-Lactamase-Like Protein; Beta-Lactamase; Metallo-Beta-Lactamase; Metal Dependent Hydrolase; Methyl Parathion Hydrolase; Metallo-Beta-Lactamase Superfamily; Beta-Lactamase Family Protein; Hydrolase; Beta-Lactamase Superfamily Hydrolase; Metallo-Hydrolase Protein; Glyoxalase II; Zn-Dependent Beta-Lactamase Domain Hydrolase; Beta-Lactamase/Hydrolase; Metal-Dependent Hydrolase; Organophosphate Pesticide Hydrolase; Signal Peptide; Beta-Lactamase-Like Zn-Dependent Hydrolase Protein; Metallo-Beta-Lactamase Domain-Containing Protein; GloB Protein; Aldehyde Dehydrogenase; Metallo-Beta-Lactamase Family Methyl Parathion Hydrolase; Signal Peptide Protein; Metall Dependent Hydrolase; Zn-Dependent Hydrolase Including Glyoxylase
Number of amino acids: Translated: 312; Mature: 311
Protein sequence:
>312_residues MTLKLSRRAALAGVAAAPIAAAVAAPARAAGHEAAKAPLHARAFKVGDYTVHSLLAGSTGRDGVKDIFGGGASDEAFSEV AAENFISDTSAQFYFTPTLVDTGSEKILFDTGLNAGGITKALADAGVTPEEVDVVVLTHMHGDHIGGMTDDSGAATFANA RYVTAAAEYDHWTAMPEGNGGADRVRAKVAPQAEKMSFIDDGGAVASGVTGMAAFGHTPGHMVYMIESAGQQLLLTADLA NHYVFPFAHPEWQTSFDTDKDAASATRRRVLEMLADSRTPMIGYHMPFPAAGYVERRGEGFRFVPVSYQMMG
Sequences:
>Translated_312_residues MTLKLSRRAALAGVAAAPIAAAVAAPARAAGHEAAKAPLHARAFKVGDYTVHSLLAGSTGRDGVKDIFGGGASDEAFSEV AAENFISDTSAQFYFTPTLVDTGSEKILFDTGLNAGGITKALADAGVTPEEVDVVVLTHMHGDHIGGMTDDSGAATFANA RYVTAAAEYDHWTAMPEGNGGADRVRAKVAPQAEKMSFIDDGGAVASGVTGMAAFGHTPGHMVYMIESAGQQLLLTADLA NHYVFPFAHPEWQTSFDTDKDAASATRRRVLEMLADSRTPMIGYHMPFPAAGYVERRGEGFRFVPVSYQMMG >Mature_311_residues TLKLSRRAALAGVAAAPIAAAVAAPARAAGHEAAKAPLHARAFKVGDYTVHSLLAGSTGRDGVKDIFGGGASDEAFSEVA AENFISDTSAQFYFTPTLVDTGSEKILFDTGLNAGGITKALADAGVTPEEVDVVVLTHMHGDHIGGMTDDSGAATFANAR YVTAAAEYDHWTAMPEGNGGADRVRAKVAPQAEKMSFIDDGGAVASGVTGMAAFGHTPGHMVYMIESAGQQLLLTADLAN HYVFPFAHPEWQTSFDTDKDAASATRRRVLEMLADSRTPMIGYHMPFPAAGYVERRGEGFRFVPVSYQMMG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 32746; Mature: 32615
Theoretical pI: Translated: 5.50; Mature: 5.50
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 4.2 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 3.9 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTLKLSRRAALAGVAAAPIAAAVAAPARAAGHEAAKAPLHARAFKVGDYTVHSLLAGSTG CEEECCCHHHHHHHHHHHHHHHHHCCHHHCCCHHHCCCCHHEEEEECCHHHHHHHCCCCC RDGVKDIFGGGASDEAFSEVAAENFISDTSAQFYFTPTLVDTGSEKILFDTGLNAGGITK CCCHHHHHCCCCCHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCCEEEEECCCCCCCHHH ALADAGVTPEEVDVVVLTHMHGDHIGGMTDDSGAATFANARYVTAAAEYDHWTAMPEGNG HHHHCCCCHHHEEEEEEEEECCCCCCCCCCCCCCEEECCCEEEEEEECCCCEECCCCCCC GADRVRAKVAPQAEKMSFIDDGGAVASGVTGMAAFGHTPGHMVYMIESAGQQLLLTADLA CHHHHEEECCCCHHHHEEECCCCCHHHCCHHHHHHCCCCCEEEEEEECCCCEEEEEEECC NHYVFPFAHPEWQTSFDTDKDAASATRRRVLEMLADSRTPMIGYHMPFPAAGYVERRGEG CCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHCCCC FRFVPVSYQMMG EEEEEEEEEECC >Mature Secondary Structure TLKLSRRAALAGVAAAPIAAAVAAPARAAGHEAAKAPLHARAFKVGDYTVHSLLAGSTG EEECCCHHHHHHHHHHHHHHHHHCCHHHCCCHHHCCCCHHEEEEECCHHHHHHHCCCCC RDGVKDIFGGGASDEAFSEVAAENFISDTSAQFYFTPTLVDTGSEKILFDTGLNAGGITK CCCHHHHHCCCCCHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCCEEEEECCCCCCCHHH ALADAGVTPEEVDVVVLTHMHGDHIGGMTDDSGAATFANARYVTAAAEYDHWTAMPEGNG HHHHCCCCHHHEEEEEEEEECCCCCCCCCCCCCCEEECCCEEEEEEECCCCEECCCCCCC GADRVRAKVAPQAEKMSFIDDGGAVASGVTGMAAFGHTPGHMVYMIESAGQQLLLTADLA CHHHHEEECCCCHHHHEEECCCCCHHHCCHHHHHHCCCCCEEEEEEECCCCEEEEEEECC NHYVFPFAHPEWQTSFDTDKDAASATRRRVLEMLADSRTPMIGYHMPFPAAGYVERRGEG CCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHCCCC FRFVPVSYQMMG EEEEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA