| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is nadA [H]
Identifier: 99082090
GI number: 99082090
Start: 2364425
End: 2365480
Strand: Reverse
Name: nadA [H]
Synonym: TM1040_2250
Alternate gene names: 99082090
Gene position: 2365480-2364425 (Counterclockwise)
Preceding gene: 99082094
Following gene: 99082089
Centisome position: 73.9
GC content: 59.94
Gene sequence:
>1056_bases ATGTCGCTAGATATTCCCGTGCTGCGCAGTGAATTGTCTCAGCACTACGATCTCACTCCGAACCCCGAACTCGCAGAAGC CATGTCTGATGTCTATCAGCGCATGTCGCGCGTGGTGTCGCCCGTCGATTGGGTGCTTTATGCGCCCTACGTCAAGGCCA TCAATGAGCTCAAGGCCAAGCGCAACGCCGTGATCCTCGGCCACAACTACATGACGCCCGAGATCTTTCACGGCATCTCC GACTTTGTGGGCGACAGTCTGCAGCTCGCGATCAAGGCGACCGAGGTCGAGGCCGATGTGATCGTGCAATGCGGCGTGCA TTTCATGGCCGAAACCTCCAAGATCCTGAGCCCCTCCAAAACGGTGCTGATGCCCGACATGGATGCAGGGTGCAGCCTTG CGGAGTCGATCACCGCCGAAGGGGTCGAGGAGATGCGCCGCCGTTACCCCGGCGCGCCGGTTGTGTCTTATGTGAACACC ACCGCCGAGGTGAAAGCGGCCTCCGACATTTGCTGTACATCCTCCAACGCGGCCCAGATCGTCGGCGCAATGGAAAGCGA CACGGTCATCATGACGCCGGATCAGTATCTGGCGCAGAATGTGGCCCGCGATGTGCCGCACAAGAACGTGGTCTGGTGGG AAGGCTCCTGCATCGTGCATGAGCAATACACCGCCAAGGATCTGCGCGATTTCCGCGAATGGAACCCCGGCACCCGGCTG ATCGCGCACCCCGAATGTCCGCCGGATGTGGTGGCAGAGGCCGATTTCTCCGGTTCCACCAGCGGCATCCTCAAATACGT GACGGATGAGAAGCCGGAAAAGGCGCTCCTGATCACCGAGTGTTCAATGGCCTCGAACATTGCCGACGCATTGCCCGAAG TCGAATTTGTCGGCCCCTGCAACATGTGCCCCTACATGAAGAAGATCACGCTGGAGAAAGTCCTCTGGTCGCTGCACTCC ATGGAGGGTCAGGTCGAGGTCGAGCCCGAAATGGCCGCCAAGGCGCGACACGCGGTGCAGGCGATGATCGACCTGTCGCG CAAGCTGGGCATCTAA
Upstream 100 bases:
>100_bases TGTAACCGGGCGCAAGCGCGTGTGTGCAAACCCGTCCGATTTTTTGGTGCCGTTGCGATACGTCTGCGGCCCGCGACCAT ATGAAGGGGAAAACCCAGCA
Downstream 100 bases:
>100_bases GCGCAGCATGGAAAGCTCTCAGGACATCCAAAGCAACCGCATCGTCATCATCGGTGCGGGGCTGGGGGCGCTTTATGCGG CGTTGACGCTCGCGCCGCGC
Product: quinolinate synthetase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 351; Mature: 350
Protein sequence:
>351_residues MSLDIPVLRSELSQHYDLTPNPELAEAMSDVYQRMSRVVSPVDWVLYAPYVKAINELKAKRNAVILGHNYMTPEIFHGIS DFVGDSLQLAIKATEVEADVIVQCGVHFMAETSKILSPSKTVLMPDMDAGCSLAESITAEGVEEMRRRYPGAPVVSYVNT TAEVKAASDICCTSSNAAQIVGAMESDTVIMTPDQYLAQNVARDVPHKNVVWWEGSCIVHEQYTAKDLRDFREWNPGTRL IAHPECPPDVVAEADFSGSTSGILKYVTDEKPEKALLITECSMASNIADALPEVEFVGPCNMCPYMKKITLEKVLWSLHS MEGQVEVEPEMAAKARHAVQAMIDLSRKLGI
Sequences:
>Translated_351_residues MSLDIPVLRSELSQHYDLTPNPELAEAMSDVYQRMSRVVSPVDWVLYAPYVKAINELKAKRNAVILGHNYMTPEIFHGIS DFVGDSLQLAIKATEVEADVIVQCGVHFMAETSKILSPSKTVLMPDMDAGCSLAESITAEGVEEMRRRYPGAPVVSYVNT TAEVKAASDICCTSSNAAQIVGAMESDTVIMTPDQYLAQNVARDVPHKNVVWWEGSCIVHEQYTAKDLRDFREWNPGTRL IAHPECPPDVVAEADFSGSTSGILKYVTDEKPEKALLITECSMASNIADALPEVEFVGPCNMCPYMKKITLEKVLWSLHS MEGQVEVEPEMAAKARHAVQAMIDLSRKLGI >Mature_350_residues SLDIPVLRSELSQHYDLTPNPELAEAMSDVYQRMSRVVSPVDWVLYAPYVKAINELKAKRNAVILGHNYMTPEIFHGISD FVGDSLQLAIKATEVEADVIVQCGVHFMAETSKILSPSKTVLMPDMDAGCSLAESITAEGVEEMRRRYPGAPVVSYVNTT AEVKAASDICCTSSNAAQIVGAMESDTVIMTPDQYLAQNVARDVPHKNVVWWEGSCIVHEQYTAKDLRDFREWNPGTRLI AHPECPPDVVAEADFSGSTSGILKYVTDEKPEKALLITECSMASNIADALPEVEFVGPCNMCPYMKKITLEKVLWSLHSM EGQVEVEPEMAAKARHAVQAMIDLSRKLGI
Specific function: Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate [H]
COG id: COG0379
COG function: function code H; Quinolinate synthase
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the quinolinate synthase A family. Type 2 subfamily [H]
Homologues:
Organism=Escherichia coli, GI1786964, Length=321, Percent_Identity=30.8411214953271, Blast_Score=146, Evalue=2e-36,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003473 - InterPro: IPR023066 [H]
Pfam domain/function: PF02445 NadA [H]
EC number: =2.5.1.72 [H]
Molecular weight: Translated: 38696; Mature: 38564
Theoretical pI: Translated: 4.61; Mature: 4.61
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.6 %Cys (Translated Protein) 4.6 %Met (Translated Protein) 7.1 %Cys+Met (Translated Protein) 2.6 %Cys (Mature Protein) 4.3 %Met (Mature Protein) 6.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSLDIPVLRSELSQHYDLTPNPELAEAMSDVYQRMSRVVSPVDWVLYAPYVKAINELKAK CCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH RNAVILGHNYMTPEIFHGISDFVGDSLQLAIKATEVEADVIVQCGVHFMAETSKILSPSK CCEEEEECCCCCHHHHHHHHHHCCCCEEEEEEEECCCHHHHHHHCHHHHHHHHHHCCCCC TVLMPDMDAGCSLAESITAEGVEEMRRRYPGAPVVSYVNTTAEVKAASDICCTSSNAAQI EEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHCCHHHHHHCCCCEECCCCHHHH VGAMESDTVIMTPDQYLAQNVARDVPHKNVVWWEGSCIVHEQYTAKDLRDFREWNPGTRL EEECCCCEEEECCHHHHHHHHHHHCCCCCEEEECCCEEEECCCCHHHHHHHHHCCCCCEE IAHPECPPDVVAEADFSGSTSGILKYVTDEKPEKALLITECSMASNIADALPEVEFVGPC EECCCCCHHHHCCCCCCCCCHHHHHHHCCCCCCCEEEEEEHHHHHHHHHHCCCCEECCCC NMCPYMKKITLEKVLWSLHSMEGQVEVEPEMAAKARHAVQAMIDLSRKLGI CCCHHHHHHHHHHHHHHHHCCCCCEEECHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure SLDIPVLRSELSQHYDLTPNPELAEAMSDVYQRMSRVVSPVDWVLYAPYVKAINELKAK CCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH RNAVILGHNYMTPEIFHGISDFVGDSLQLAIKATEVEADVIVQCGVHFMAETSKILSPSK CCEEEEECCCCCHHHHHHHHHHCCCCEEEEEEEECCCHHHHHHHCHHHHHHHHHHCCCCC TVLMPDMDAGCSLAESITAEGVEEMRRRYPGAPVVSYVNTTAEVKAASDICCTSSNAAQI EEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHCCHHHHHHCCCCEECCCCHHHH VGAMESDTVIMTPDQYLAQNVARDVPHKNVVWWEGSCIVHEQYTAKDLRDFREWNPGTRL EEECCCCEEEECCHHHHHHHHHHHCCCCCEEEECCCEEEECCCCHHHHHHHHHCCCCCEE IAHPECPPDVVAEADFSGSTSGILKYVTDEKPEKALLITECSMASNIADALPEVEFVGPC EECCCCCHHHHCCCCCCCCCHHHHHHHCCCCCCCEEEEEEHHHHHHHHHHCCCCEECCCC NMCPYMKKITLEKVLWSLHSMEGQVEVEPEMAAKARHAVQAMIDLSRKLGI CCCHHHHHHHHHHHHHHHHCCCCCEEECHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 11481430 [H]