| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is 99082086
Identifier: 99082086
GI number: 99082086
Start: 2360446
End: 2360919
Strand: Reverse
Name: 99082086
Synonym: TM1040_2246
Alternate gene names: NA
Gene position: 2360919-2360446 (Counterclockwise)
Preceding gene: 99082088
Following gene: 99082085
Centisome position: 73.76
GC content: 61.6
Gene sequence:
>474_bases ATGACATCCACAGCCCGCCCGCCGCTGCCGCCCTTCACCCGAGAGAGCGCCATTGAAAAAATCCGTCTGGCCGAAGATGG CTGGAACAGCCGCGACGCGGCCAAGGTCAGCTTGGCCTATACGCCTGACAGCCGCTGGCGCAACCGGGCAGAGTTTCCCG TTGGGCGCACCGAAATCGAAGCCTTCCTGACCCGCAAATGGGCGCGCGAGCTGGAATATCGGCTCATCAAGGAGCTCTGG GCCTTTGACGGCAATCGCATCGCTGTGCGCTACGCCTATGAATATCGCGACGACAGCGGCCACTGGTTCCGCGCCTATGG CAATGAAAACTGGCAGTTTGATGAGAACGGCCTGATGGAAGAGCGCCACGCCTCCATCAATGAGCACCCCATTTCTGAGG CGGATCGCAAGTTCCACTGGCCGCTTGGGCGTCGTCCTGACGACCATCCGGGCCTCAGCGACCTTGGCCTCTGA
Upstream 100 bases:
>100_bases GAAATTATCTCTTTCTGACACGCCGTATTATTTTACACAACGGGTTGATTTATCTCTCTCGACAGAGGCGAACACCCGCG CCGCCACATCGGAGATAGAG
Downstream 100 bases:
>100_bases GCCACGACTTTCCCGACAGATTGACCTCACAGATAGACCTCAAGGATACCCAAATGAACGCCGAATTTGCCTCCTCCTCC GCACCGATCAAACTCTATCG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 157; Mature: 156
Protein sequence:
>157_residues MTSTARPPLPPFTRESAIEKIRLAEDGWNSRDAAKVSLAYTPDSRWRNRAEFPVGRTEIEAFLTRKWARELEYRLIKELW AFDGNRIAVRYAYEYRDDSGHWFRAYGNENWQFDENGLMEERHASINEHPISEADRKFHWPLGRRPDDHPGLSDLGL
Sequences:
>Translated_157_residues MTSTARPPLPPFTRESAIEKIRLAEDGWNSRDAAKVSLAYTPDSRWRNRAEFPVGRTEIEAFLTRKWARELEYRLIKELW AFDGNRIAVRYAYEYRDDSGHWFRAYGNENWQFDENGLMEERHASINEHPISEADRKFHWPLGRRPDDHPGLSDLGL >Mature_156_residues TSTARPPLPPFTRESAIEKIRLAEDGWNSRDAAKVSLAYTPDSRWRNRAEFPVGRTEIEAFLTRKWARELEYRLIKELWA FDGNRIAVRYAYEYRDDSGHWFRAYGNENWQFDENGLMEERHASINEHPISEADRKFHWPLGRRPDDHPGLSDLGL
Specific function: Unknown
COG id: COG3558
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 18535; Mature: 18403
Theoretical pI: Translated: 6.37; Mature: 6.37
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 1.3 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.6 %Met (Mature Protein) 0.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTSTARPPLPPFTRESAIEKIRLAEDGWNSRDAAKVSLAYTPDSRWRNRAEFPVGRTEIE CCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCEEEEEEECCCHHHCCCCCCCCCHHHHH AFLTRKWARELEYRLIKELWAFDGNRIAVRYAYEYRDDSGHWFRAYGNENWQFDENGLME HHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEEECCCCCEEEEECCCCCEECCCCCHH ERHASINEHPISEADRKFHWPLGRRPDDHPGLSDLGL HHHCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCC >Mature Secondary Structure TSTARPPLPPFTRESAIEKIRLAEDGWNSRDAAKVSLAYTPDSRWRNRAEFPVGRTEIE CCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCEEEEEEECCCHHHCCCCCCCCCHHHHH AFLTRKWARELEYRLIKELWAFDGNRIAVRYAYEYRDDSGHWFRAYGNENWQFDENGLME HHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEEECCCCCEEEEECCCCCEECCCCCHH ERHASINEHPISEADRKFHWPLGRRPDDHPGLSDLGL HHHCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA