| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is gstA [H]
Identifier: 99082085
GI number: 99082085
Start: 2359730
End: 2360392
Strand: Reverse
Name: gstA [H]
Synonym: TM1040_2245
Alternate gene names: 99082085
Gene position: 2360392-2359730 (Counterclockwise)
Preceding gene: 99082086
Following gene: 99082084
Centisome position: 73.74
GC content: 63.5
Gene sequence:
>663_bases ATGAACGCCGAATTTGCCTCCTCCTCCGCACCGATCAAACTCTATCGCCACCCGCTCTCGGGGCATTGTCACCGGGTCGA GATGATGCTCTCGATCCTCGATCTGCCCTATGAGTTGGTCGACCTCGACCTGCTGCAGGGCGCGCATAAGGCGCCCGCGT TCCTGGATCTCAACCCGTTTGGGCAGGTTCCAGTTCTGGACGACAACGGCACCATCGTCAGCGATTCCAATGCGATCCTT GTCTATCTTGTCGAGGCCTACGGCAAAGAGACGGGTTGGTTGCCCCGCGCGCCCGGTGTGGCCGCCGCAGTTCAGCGCTG GCTGTCGCTTACGGTATCGCATCTGGCAACCGGTCCCGCGCGGGCGCGTTGGCGGACCCTGACCGGCGCGAGCGACACGC CGGAAACGGAGACAGCGCGTGCCATCAGCCATGCCTTTCTGGAGCAGATGGAAGGTCTGATCTCGGGTCAGCACTACCTG GCAGGAGAGGCGCCTACGATCGCGGATGTGTCTGCCTACGCCTATATCGCACACGCGCCCGAGGGAGGTGTGAGCCTTGC GGCCTATCCAAAGGTACGGGCGTGGATCGATCGGGTCGAAGCGCTTCAGGGGTTTGTGCCGATGCAGGCCTCCCCGCTGC CAGAGCTTGCGCGAGGCGCCTGA
Upstream 100 bases:
>100_bases GGCGTCGTCCTGACGACCATCCGGGCCTCAGCGACCTTGGCCTCTGAGCCACGACTTTCCCGACAGATTGACCTCACAGA TAGACCTCAAGGATACCCAA
Downstream 100 bases:
>100_bases GATGTCCCGCTCTGAGCAGGTTTTCCACGCAGGCGAATTGATCCTGCAAAACCGCGCCGGTGTCGCGCCAAGCTATCGCG AGCGGGTGGCCCATGCCATC
Product: glutathione S-transferase-like
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 220; Mature: 220
Protein sequence:
>220_residues MNAEFASSSAPIKLYRHPLSGHCHRVEMMLSILDLPYELVDLDLLQGAHKAPAFLDLNPFGQVPVLDDNGTIVSDSNAIL VYLVEAYGKETGWLPRAPGVAAAVQRWLSLTVSHLATGPARARWRTLTGASDTPETETARAISHAFLEQMEGLISGQHYL AGEAPTIADVSAYAYIAHAPEGGVSLAAYPKVRAWIDRVEALQGFVPMQASPLPELARGA
Sequences:
>Translated_220_residues MNAEFASSSAPIKLYRHPLSGHCHRVEMMLSILDLPYELVDLDLLQGAHKAPAFLDLNPFGQVPVLDDNGTIVSDSNAIL VYLVEAYGKETGWLPRAPGVAAAVQRWLSLTVSHLATGPARARWRTLTGASDTPETETARAISHAFLEQMEGLISGQHYL AGEAPTIADVSAYAYIAHAPEGGVSLAAYPKVRAWIDRVEALQGFVPMQASPLPELARGA >Mature_220_residues MNAEFASSSAPIKLYRHPLSGHCHRVEMMLSILDLPYELVDLDLLQGAHKAPAFLDLNPFGQVPVLDDNGTIVSDSNAIL VYLVEAYGKETGWLPRAPGVAAAVQRWLSLTVSHLATGPARARWRTLTGASDTPETETARAISHAFLEQMEGLISGQHYL AGEAPTIADVSAYAYIAHAPEGGVSLAAYPKVRAWIDRVEALQGFVPMQASPLPELARGA
Specific function: Unknown
COG id: COG0625
COG function: function code O; Glutathione S-transferase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 GST N-terminal domain [H]
Homologues:
Organism=Homo sapiens, GI167466164, Length=203, Percent_Identity=29.064039408867, Blast_Score=81, Evalue=9e-16, Organism=Homo sapiens, GI4504187, Length=177, Percent_Identity=29.3785310734463, Blast_Score=74, Evalue=9e-14, Organism=Homo sapiens, GI124249394, Length=177, Percent_Identity=29.3785310734463, Blast_Score=74, Evalue=9e-14, Organism=Escherichia coli, GI1788640, Length=205, Percent_Identity=28.780487804878, Blast_Score=64, Evalue=6e-12, Organism=Drosophila melanogaster, GI19922526, Length=209, Percent_Identity=33.4928229665072, Blast_Score=103, Evalue=1e-22, Organism=Drosophila melanogaster, GI19922532, Length=181, Percent_Identity=32.5966850828729, Blast_Score=87, Evalue=6e-18, Organism=Drosophila melanogaster, GI17864592, Length=212, Percent_Identity=30.188679245283, Blast_Score=87, Evalue=6e-18, Organism=Drosophila melanogaster, GI28571670, Length=175, Percent_Identity=28.5714285714286, Blast_Score=87, Evalue=8e-18, Organism=Drosophila melanogaster, GI17864598, Length=191, Percent_Identity=27.7486910994764, Blast_Score=85, Evalue=5e-17, Organism=Drosophila melanogaster, GI85725204, Length=192, Percent_Identity=29.1666666666667, Blast_Score=84, Evalue=1e-16, Organism=Drosophila melanogaster, GI17737923, Length=192, Percent_Identity=29.1666666666667, Blast_Score=84, Evalue=1e-16, Organism=Drosophila melanogaster, GI24646259, Length=192, Percent_Identity=29.1666666666667, Blast_Score=83, Evalue=1e-16, Organism=Drosophila melanogaster, GI45549270, Length=184, Percent_Identity=29.3478260869565, Blast_Score=83, Evalue=1e-16, Organism=Drosophila melanogaster, GI221378983, Length=192, Percent_Identity=29.1666666666667, Blast_Score=83, Evalue=2e-16, Organism=Drosophila melanogaster, GI17864594, Length=189, Percent_Identity=30.1587301587302, Blast_Score=82, Evalue=4e-16, Organism=Drosophila melanogaster, GI19922528, Length=195, Percent_Identity=31.2820512820513, Blast_Score=81, Evalue=5e-16, Organism=Drosophila melanogaster, GI20130123, Length=202, Percent_Identity=32.6732673267327, Blast_Score=81, Evalue=5e-16, Organism=Drosophila melanogaster, GI19922932, Length=197, Percent_Identity=33.502538071066, Blast_Score=80, Evalue=1e-15, Organism=Drosophila melanogaster, GI20130115, Length=180, Percent_Identity=30, Blast_Score=79, Evalue=3e-15, Organism=Drosophila melanogaster, GI24654965, Length=182, Percent_Identity=32.967032967033, Blast_Score=79, Evalue=3e-15, Organism=Drosophila melanogaster, GI24654975, Length=188, Percent_Identity=31.3829787234043, Blast_Score=77, Evalue=6e-15, Organism=Drosophila melanogaster, GI17864596, Length=185, Percent_Identity=27.027027027027, Blast_Score=76, Evalue=2e-14, Organism=Drosophila melanogaster, GI24654992, Length=179, Percent_Identity=31.2849162011173, Blast_Score=75, Evalue=3e-14, Organism=Drosophila melanogaster, GI24646251, Length=192, Percent_Identity=27.0833333333333, Blast_Score=75, Evalue=3e-14, Organism=Drosophila melanogaster, GI24654983, Length=180, Percent_Identity=29.4444444444444, Blast_Score=74, Evalue=1e-13, Organism=Drosophila melanogaster, GI17933730, Length=187, Percent_Identity=26.2032085561497, Blast_Score=73, Evalue=1e-13, Organism=Drosophila melanogaster, GI24654996, Length=183, Percent_Identity=33.3333333333333, Blast_Score=72, Evalue=2e-13, Organism=Drosophila melanogaster, GI221378141, Length=181, Percent_Identity=25.414364640884, Blast_Score=71, Evalue=6e-13, Organism=Drosophila melanogaster, GI24654979, Length=181, Percent_Identity=28.1767955801105, Blast_Score=70, Evalue=2e-12, Organism=Drosophila melanogaster, GI24646249, Length=192, Percent_Identity=26.0416666666667, Blast_Score=68, Evalue=5e-12, Organism=Drosophila melanogaster, GI62472445, Length=151, Percent_Identity=28.476821192053, Blast_Score=67, Evalue=8e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR010987 - InterPro: IPR004045 - InterPro: IPR017933 - InterPro: IPR004046 - InterPro: IPR012336 - InterPro: IPR012335 [H]
Pfam domain/function: PF00043 GST_C; PF02798 GST_N [H]
EC number: NA
Molecular weight: Translated: 23651; Mature: 23651
Theoretical pI: Translated: 5.51; Mature: 5.51
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNAEFASSSAPIKLYRHPLSGHCHRVEMMLSILDLPYELVDLDLLQGAHKAPAFLDLNPF CCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCEEEECCCC GQVPVLDDNGTIVSDSNAILVYLVEAYGKETGWLPRAPGVAAAVQRWLSLTVSHLATGPA CCCEEECCCCCEEECCCEEEEEEEHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCC RARWRTLTGASDTPETETARAISHAFLEQMEGLISGQHYLAGEAPTIADVSAYAYIAHAP HHHEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCHHHHHHEEEEEECC EGGVSLAAYPKVRAWIDRVEALQGFVPMQASPLPELARGA CCCCEEEECHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCC >Mature Secondary Structure MNAEFASSSAPIKLYRHPLSGHCHRVEMMLSILDLPYELVDLDLLQGAHKAPAFLDLNPF CCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCEEEECCCC GQVPVLDDNGTIVSDSNAILVYLVEAYGKETGWLPRAPGVAAAVQRWLSLTVSHLATGPA CCCEEECCCCCEEECCCEEEEEEEHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCC RARWRTLTGASDTPETETARAISHAFLEQMEGLISGQHYLAGEAPTIADVSAYAYIAHAP HHHEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCHHHHHHEEEEEECC EGGVSLAAYPKVRAWIDRVEALQGFVPMQASPLPELARGA CCCCEEEECHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA