Definition Ruegeria sp. TM1040, complete genome.
Accession NC_008044
Length 3,200,938

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The map label for this gene is 99082084

Identifier: 99082084

GI number: 99082084

Start: 2358787

End: 2359728

Strand: Reverse

Name: 99082084

Synonym: TM1040_2244

Alternate gene names: NA

Gene position: 2359728-2358787 (Counterclockwise)

Preceding gene: 99082085

Following gene: 99082083

Centisome position: 73.72

GC content: 64.01

Gene sequence:

>942_bases
ATGTCCCGCTCTGAGCAGGTTTTCCACGCAGGCGAATTGATCCTGCAAAACCGCGCCGGTGTCGCGCCAAGCTATCGCGA
GCGGGTGGCCCATGCCATCCGCCCGCAGATGCCTCAACAGCATCGCGATTTCTTTGAGAGCCTGCCGGTGCTCTTTCTGG
GTTTGCTTGACGCGCGTGGGCGAGTCTGGGCGACACCTGCGGTGGGTGAAGTTGGCTTTCTGCGTTCGCGCGACCCCGGT
CATCTGGCGGTCGGGGCGCGCCCAGTGTTGGGCGAAACGCTTTGGCTGGATGTTCGCGCCGGGGCCAAGGTGGGCGCGGT
GGGCATGGAAATGGCCAGTCGCCGCCGCAACCGCATGAACGGCACCATCACTGCGGTCAATGGAGAAGGATTTGAGATCG
CGGTGGACCTGAGCTTTGGCAATTGCCCGCAGTATATCCAGACCCGCGATCTCGTATGGCCCGCCAATCCGCCAGCGCCC
GAGGCCGTGGCGCTGCCCGATTGGGAGTCGCAAAGCCGCGCGCTGGTCGCGCAGGCCGATACCTTTTTTATCGCGTCGCG
CGCGGCCGAGATGTCAGCGCGCCCCATCGATGGGGTTGATGCCTCGCACCGTGGCGGGCGGCCCGGTTTCCTGACGATCA
ACGACGACAGCTCGCTCTCCTTTCCCGATTTTGCCGGAAACCGGTTTTTCAACACGCTCGGCAACATTGAGGCCGATGGG
CGCGTAGGGCTTTTCATCCCCGACTTCAAAAGCGGTGCGGGGATCTTTGTCACCGGTCTGGCGACGGTCGACTGGCGCCC
TGACCGCGTGTCCCACTTCAAAGGGGCGGAGCGGATCGTCGACGTGCAGCCAGAGGAAATCTGGTACTGCACGCATGCTC
TGCCCGGGCCTGCGCCCCTGGTCAGCACATGGCCACTGCTTGCGGAAACAGGCGTCTGGTAG

Upstream 100 bases:

>100_bases
TATCCAAAGGTACGGGCGTGGATCGATCGGGTCGAAGCGCTTCAGGGGTTTGTGCCGATGCAGGCCTCCCCGCTGCCAGA
GCTTGCGCGAGGCGCCTGAG

Downstream 100 bases:

>100_bases
GGGGGCGAAATCCTGGTGCGACTCACGGCAGGGCAGGCTCAGACGGGCCTGCCCTTGGCCCTTGATATTGGCAGTGACGC
GATTTTGAGCGCTGGGAACG

Product: pyridoxamine 5'-phosphate oxidase-related, FMN-binding

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 313; Mature: 312

Protein sequence:

>313_residues
MSRSEQVFHAGELILQNRAGVAPSYRERVAHAIRPQMPQQHRDFFESLPVLFLGLLDARGRVWATPAVGEVGFLRSRDPG
HLAVGARPVLGETLWLDVRAGAKVGAVGMEMASRRRNRMNGTITAVNGEGFEIAVDLSFGNCPQYIQTRDLVWPANPPAP
EAVALPDWESQSRALVAQADTFFIASRAAEMSARPIDGVDASHRGGRPGFLTINDDSSLSFPDFAGNRFFNTLGNIEADG
RVGLFIPDFKSGAGIFVTGLATVDWRPDRVSHFKGAERIVDVQPEEIWYCTHALPGPAPLVSTWPLLAETGVW

Sequences:

>Translated_313_residues
MSRSEQVFHAGELILQNRAGVAPSYRERVAHAIRPQMPQQHRDFFESLPVLFLGLLDARGRVWATPAVGEVGFLRSRDPG
HLAVGARPVLGETLWLDVRAGAKVGAVGMEMASRRRNRMNGTITAVNGEGFEIAVDLSFGNCPQYIQTRDLVWPANPPAP
EAVALPDWESQSRALVAQADTFFIASRAAEMSARPIDGVDASHRGGRPGFLTINDDSSLSFPDFAGNRFFNTLGNIEADG
RVGLFIPDFKSGAGIFVTGLATVDWRPDRVSHFKGAERIVDVQPEEIWYCTHALPGPAPLVSTWPLLAETGVW
>Mature_312_residues
SRSEQVFHAGELILQNRAGVAPSYRERVAHAIRPQMPQQHRDFFESLPVLFLGLLDARGRVWATPAVGEVGFLRSRDPGH
LAVGARPVLGETLWLDVRAGAKVGAVGMEMASRRRNRMNGTITAVNGEGFEIAVDLSFGNCPQYIQTRDLVWPANPPAPE
AVALPDWESQSRALVAQADTFFIASRAAEMSARPIDGVDASHRGGRPGFLTINDDSSLSFPDFAGNRFFNTLGNIEADGR
VGLFIPDFKSGAGIFVTGLATVDWRPDRVSHFKGAERIVDVQPEEIWYCTHALPGPAPLVSTWPLLAETGVW

Specific function: Unknown

COG id: COG3576

COG function: function code R; Predicted flavin-nucleotide-binding protein structurally related to pyridoxine 5'-phosphate oxidase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 34154; Mature: 34023

Theoretical pI: Translated: 6.17; Mature: 6.17

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRSEQVFHAGELILQNRAGVAPSYRERVAHAIRPQMPQQHRDFFESLPVLFLGLLDARG
CCCCCCHHHHHHHEEECCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCC
RVWATPAVGEVGFLRSRDPGHLAVGARPVLGETLWLDVRAGAKVGAVGMEMASRRRNRMN
CEEECCCCCCCCCCCCCCCCEEEECCCCCCCCEEEEEECCCCEECHHHHHHHHHHHHCCC
GTITAVNGEGFEIAVDLSFGNCPQYIQTRDLVWPANPPAPEAVALPDWESQSRALVAQAD
CEEEEECCCCEEEEEEECCCCCCHHHHHCCEEECCCCCCCCEEECCCCCCCCCEEEEECC
TFFIASRAAEMSARPIDGVDASHRGGRPGFLTINDDSSLSFPDFAGNRFFNTLGNIEADG
EEEEEHHHHHHCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCHHHHHHCCCCCCC
RVGLFIPDFKSGAGIFVTGLATVDWRPDRVSHFKGAERIVDVQPEEIWYCTHALPGPAPL
EEEEEECCCCCCCCEEEEEEEEECCCCCHHHHHCCCCCEEECCCHHEEEEECCCCCCCCH
VSTWPLLAETGVW
HHCCHHHHCCCCC
>Mature Secondary Structure 
SRSEQVFHAGELILQNRAGVAPSYRERVAHAIRPQMPQQHRDFFESLPVLFLGLLDARG
CCCCCHHHHHHHEEECCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCC
RVWATPAVGEVGFLRSRDPGHLAVGARPVLGETLWLDVRAGAKVGAVGMEMASRRRNRMN
CEEECCCCCCCCCCCCCCCCEEEECCCCCCCCEEEEEECCCCEECHHHHHHHHHHHHCCC
GTITAVNGEGFEIAVDLSFGNCPQYIQTRDLVWPANPPAPEAVALPDWESQSRALVAQAD
CEEEEECCCCEEEEEEECCCCCCHHHHHCCEEECCCCCCCCEEECCCCCCCCCEEEEECC
TFFIASRAAEMSARPIDGVDASHRGGRPGFLTINDDSSLSFPDFAGNRFFNTLGNIEADG
EEEEEHHHHHHCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCHHHHHHCCCCCCC
RVGLFIPDFKSGAGIFVTGLATVDWRPDRVSHFKGAERIVDVQPEEIWYCTHALPGPAPL
EEEEEECCCCCCCCEEEEEEEEECCCCCHHHHHCCCCCEEECCCHHEEEEECCCCCCCCH
VSTWPLLAETGVW
HHCCHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA