Click here to switch to the map view.

The map label for this gene is rutC [H]

Identifier: 99082071

GI number: 99082071

Start: 2345962

End: 2346357

Strand: Reverse

Name: rutC [H]

Synonym: TM1040_2231

Alternate gene names: 99082071

Gene position: 2346357-2345962 (Counterclockwise)

Preceding gene: 99082072

Following gene: 99082069

Centisome position: 73.3

GC content: 58.08

Gene sequence:

>396_bases
ATGACCCATAAAACCATCCACCCCGAAGGTTGGGCACCGGCCAAAGGCTATGCCAATGGCATGCTGACCCATGACGGCGT
GCTGCATATTGGCGGCCAGATCGGCTGGGACGAAAACAAGGAATTTGTCGGTGATGATTTCGTAAGCCAGATGCGTCAGG
CGCTGAAAAACATCGCGGCCATCGTCGACGCGGCCGGAGGCAAGCCCTCTGATGTGACGCGCCTGACGTGGTTTGTCACC
GACAAACAGGAATACCTGGCACATCAGGCCGAGGTGGGCGCTGCCTATCGCGAGGTGTTCGGCAAGCATTTCCCGGCAAT
GTCGATGCTGATCGTAGCAGGGCTTGTCGAGGATCGCGCGCTTGTTGAAATCGAGGCCACCGCGCATATCAGCTGA

Upstream 100 bases:

>100_bases
CGACGGAAACAACCCTGGTGCATATCAATGCCGAGGGGCGCTCAGCGCCCTGGCCCGCACCGATCCGAACCAAAATTGAG
AATGAGATGAAAGGGCAGAT

Downstream 100 bases:

>100_bases
GTACCAGTGTGCTTCAATTCACAAAAAGGGCCCCATATCTGCGGGGCCCTTTTTGTTTTGTGTTCGGCACTCAGATCTTC
AGGATCGCGTTTCCAACCAG

Product: endoribonuclease L-PSP

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 131; Mature: 130

Protein sequence:

>131_residues
MTHKTIHPEGWAPAKGYANGMLTHDGVLHIGGQIGWDENKEFVGDDFVSQMRQALKNIAAIVDAAGGKPSDVTRLTWFVT
DKQEYLAHQAEVGAAYREVFGKHFPAMSMLIVAGLVEDRALVEIEATAHIS

Sequences:

>Translated_131_residues
MTHKTIHPEGWAPAKGYANGMLTHDGVLHIGGQIGWDENKEFVGDDFVSQMRQALKNIAAIVDAAGGKPSDVTRLTWFVT
DKQEYLAHQAEVGAAYREVFGKHFPAMSMLIVAGLVEDRALVEIEATAHIS
>Mature_130_residues
THKTIHPEGWAPAKGYANGMLTHDGVLHIGGQIGWDENKEFVGDDFVSQMRQALKNIAAIVDAAGGKPSDVTRLTWFVTD
KQEYLAHQAEVGAAYREVFGKHFPAMSMLIVAGLVEDRALVEIEATAHIS

Specific function: May reduce aminoacrylate peracid to aminoacrylate. Required to remove a toxic intermediate produce by the pyrimidine nitrogen degradation [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RutC family [H]

Homologues:

Organism=Escherichia coli, GI1787245, Length=136, Percent_Identity=34.5588235294118, Blast_Score=69, Evalue=7e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013813
- InterPro:   IPR006175
- InterPro:   IPR019898
- InterPro:   IPR019897 [H]

Pfam domain/function: PF01042 Ribonuc_L-PSP [H]

EC number: NA

Molecular weight: Translated: 14301; Mature: 14170

Theoretical pI: Translated: 5.84; Mature: 5.84

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTHKTIHPEGWAPAKGYANGMLTHDGVLHIGGQIGWDENKEFVGDDFVSQMRQALKNIAA
CCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
IVDAAGGKPSDVTRLTWFVTDKQEYLAHQAEVGAAYREVFGKHFPAMSMLIVAGLVEDRA
HHHCCCCCCCCCEEEEEEEECHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCE
LVEIEATAHIS
EEEEEEEECCC
>Mature Secondary Structure 
THKTIHPEGWAPAKGYANGMLTHDGVLHIGGQIGWDENKEFVGDDFVSQMRQALKNIAA
CCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
IVDAAGGKPSDVTRLTWFVTDKQEYLAHQAEVGAAYREVFGKHFPAMSMLIVAGLVEDRA
HHHCCCCCCCCCEEEEEEEECHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCE
LVEIEATAHIS
EEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA