Definition Ruegeria sp. TM1040, complete genome.
Accession NC_008044
Length 3,200,938

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The map label for this gene is 99082044

Identifier: 99082044

GI number: 99082044

Start: 2314503

End: 2315603

Strand: Direct

Name: 99082044

Synonym: TM1040_2204

Alternate gene names: NA

Gene position: 2314503-2315603 (Clockwise)

Preceding gene: 99082043

Following gene: 99082045

Centisome position: 72.31

GC content: 65.4

Gene sequence:

>1101_bases
ATGCCCTCTCGACGCGGCTTTCTTGCAGGTCTGTTGGCCAGCAGCGTGACGCCAACCGCCACATGGGCCGATGTCGGCGC
GCCGGCCTATCTCTCTGCGGGCAAGGACGCGCTGGGGCTGTTTGTGATGGCCGGGCTTTCGGCGGCGGGCGAGGTGCTGT
TTCGCCACCCGCTGCCCGATCGCGGCCATGCGGCCAGCGCTCACCCCACACGCCCCGAAGCGGTGGCCTTTGCCCGCCGC
CCCGGGCGCTTTGCCGATGTGATCGACTGCCGTAGCGGCGCGCAGCTGGCTCGCCTTGAGCCCCCCGAGGGGCATCATTT
TTATGGGCACGGCGTGTTCTCGCCCGAAGGGGAGGTGCTTTACACCACCGAGAACGACTATGCGCGCGGTGCGGGCGTGA
TCGGTGTCTGGAACGCAGGCGACTACCACCGCATTGGCCAGTTTTCCTCGGGAGGCATCGGCCCGCACGAGATGCTCTTG
CGCCGCGACGCCCCCGGTCTTGTGGTGGCCAATGGGGGCATCGAAACCCACCCCGAGAGCGGCCGCGCCAAACTCAACAT
CCCCTTCATGCGCCCCAATCTCAGCTATCTGAGGCTTTCGGGCGAAATACAGCACCAAATGGAACTGCCCGCCGATCTGC
ACAAGAACTCGATCCGTCACATCGCGGTGCGCAGCGATGGCGCGGTGGGCTTTGCGATGCAATGGCAGGGAGATCTGGGC
GCTGATGTGCCCATTGTCGGCCTGCATCAACCCGGCAGCGCACCGCGCTTGATGGCTGAGGATGACCCGCGCCTGCGCAA
CCTCAATGGCTATGGTGGCTCGATTGCGTTCTCAGGAGATGAGACCGCAATCGCTGTGACCTCGCCGCGCGGCGGTGTGG
TGCAGGTGATGGACTGCACGAGCGGTGCCTTGCAGGCGGAACATGCCCTCTCGGATGTCTGCGGTTTGGCGCCCCTGAAA
GACGGTTTTCTGGTGAGCACCGGAACCGGGATCATGGCTCAGATCGGCACAGAGGTAACGACGCTCACGCAGGCGCCCCT
GGCTTGGGACAACCACCTCATCGCCCTTTCCTCGGCGGCATCGGCACCACGCCAGCCCTAA

Upstream 100 bases:

>100_bases
CCTGCGTGATCTCGGCCCCAAACTGGGTGTCGAGGCCGGCTTCAACGCGCTGGATGGCGACTGACCACGTGTCGCATTGC
ACTGATACAGGAGTTTCAAC

Downstream 100 bases:

>100_bases
GCAGATTCGCGTCAAACACCGATACAAAGCCCCTCTGCCCTTTTGCGAGGGGCTTTCTTTTTGATGCCACCCAATACCAA
AACGAAAATCAATAGTGACA

Product: hypothetical protein

Products: NA

Alternate protein names: Secreted Protein; Lipoprotein; Tat Pathway Signal Sequence Domain-Containing Protein

Number of amino acids: Translated: 366; Mature: 365

Protein sequence:

>366_residues
MPSRRGFLAGLLASSVTPTATWADVGAPAYLSAGKDALGLFVMAGLSAAGEVLFRHPLPDRGHAASAHPTRPEAVAFARR
PGRFADVIDCRSGAQLARLEPPEGHHFYGHGVFSPEGEVLYTTENDYARGAGVIGVWNAGDYHRIGQFSSGGIGPHEMLL
RRDAPGLVVANGGIETHPESGRAKLNIPFMRPNLSYLRLSGEIQHQMELPADLHKNSIRHIAVRSDGAVGFAMQWQGDLG
ADVPIVGLHQPGSAPRLMAEDDPRLRNLNGYGGSIAFSGDETAIAVTSPRGGVVQVMDCTSGALQAEHALSDVCGLAPLK
DGFLVSTGTGIMAQIGTEVTTLTQAPLAWDNHLIALSSAASAPRQP

Sequences:

>Translated_366_residues
MPSRRGFLAGLLASSVTPTATWADVGAPAYLSAGKDALGLFVMAGLSAAGEVLFRHPLPDRGHAASAHPTRPEAVAFARR
PGRFADVIDCRSGAQLARLEPPEGHHFYGHGVFSPEGEVLYTTENDYARGAGVIGVWNAGDYHRIGQFSSGGIGPHEMLL
RRDAPGLVVANGGIETHPESGRAKLNIPFMRPNLSYLRLSGEIQHQMELPADLHKNSIRHIAVRSDGAVGFAMQWQGDLG
ADVPIVGLHQPGSAPRLMAEDDPRLRNLNGYGGSIAFSGDETAIAVTSPRGGVVQVMDCTSGALQAEHALSDVCGLAPLK
DGFLVSTGTGIMAQIGTEVTTLTQAPLAWDNHLIALSSAASAPRQP
>Mature_365_residues
PSRRGFLAGLLASSVTPTATWADVGAPAYLSAGKDALGLFVMAGLSAAGEVLFRHPLPDRGHAASAHPTRPEAVAFARRP
GRFADVIDCRSGAQLARLEPPEGHHFYGHGVFSPEGEVLYTTENDYARGAGVIGVWNAGDYHRIGQFSSGGIGPHEMLLR
RDAPGLVVANGGIETHPESGRAKLNIPFMRPNLSYLRLSGEIQHQMELPADLHKNSIRHIAVRSDGAVGFAMQWQGDLGA
DVPIVGLHQPGSAPRLMAEDDPRLRNLNGYGGSIAFSGDETAIAVTSPRGGVVQVMDCTSGALQAEHALSDVCGLAPLKD
GFLVSTGTGIMAQIGTEVTTLTQAPLAWDNHLIALSSAASAPRQP

Specific function: Unknown

COG id: COG3490

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 38463; Mature: 38332

Theoretical pI: Translated: 6.56; Mature: 6.56

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPSRRGFLAGLLASSVTPTATWADVGAPAYLSAGKDALGLFVMAGLSAAGEVLFRHPLPD
CCCCHHHHHHHHHHCCCCCCCHHHCCCCCEECCCCHHHHHHHHHHHCHHCCEEEECCCCC
RGHAASAHPTRPEAVAFARRPGRFADVIDCRSGAQLARLEPPEGHHFYGHGVFSPEGEVL
CCCCCCCCCCCCHHEEEECCCCCCCHHEECCCCCCEEECCCCCCCEEEECCEECCCCCEE
YTTENDYARGAGVIGVWNAGDYHRIGQFSSGGIGPHEMLLRRDAPGLVVANGGIETHPES
EEECCCCCCCCCEEEEECCCCCHHCCCCCCCCCCHHHHHHHCCCCCEEEECCCCCCCCCC
GRAKLNIPFMRPNLSYLRLSGEIQHQMELPADLHKNSIRHIAVRSDGAVGFAMQWQGDLG
CCEEEEEEEECCCCEEEEECCCHHEECCCCHHHHCCCEEEEEEECCCCEEEEEEECCCCC
ADVPIVGLHQPGSAPRLMAEDDPRLRNLNGYGGSIAFSGDETAIAVTSPRGGVVQVMDCT
CCCCEEEECCCCCCCCCCCCCCCCEEECCCCCCEEEECCCCEEEEEECCCCCEEEEEECC
SGALQAEHALSDVCGLAPLKDGFLVSTGTGIMAQIGTEVTTLTQAPLAWDNHLIALSSAA
CCHHHHHHHHHHHHCCCCCCCCEEEEECCCEEEHHCCCEEEEECCCCCCCCEEEEEECCC
SAPRQP
CCCCCC
>Mature Secondary Structure 
PSRRGFLAGLLASSVTPTATWADVGAPAYLSAGKDALGLFVMAGLSAAGEVLFRHPLPD
CCCHHHHHHHHHHCCCCCCCHHHCCCCCEECCCCHHHHHHHHHHHCHHCCEEEECCCCC
RGHAASAHPTRPEAVAFARRPGRFADVIDCRSGAQLARLEPPEGHHFYGHGVFSPEGEVL
CCCCCCCCCCCCHHEEEECCCCCCCHHEECCCCCCEEECCCCCCCEEEECCEECCCCCEE
YTTENDYARGAGVIGVWNAGDYHRIGQFSSGGIGPHEMLLRRDAPGLVVANGGIETHPES
EEECCCCCCCCCEEEEECCCCCHHCCCCCCCCCCHHHHHHHCCCCCEEEECCCCCCCCCC
GRAKLNIPFMRPNLSYLRLSGEIQHQMELPADLHKNSIRHIAVRSDGAVGFAMQWQGDLG
CCEEEEEEEECCCCEEEEECCCHHEECCCCHHHHCCCEEEEEEECCCCEEEEEEECCCCC
ADVPIVGLHQPGSAPRLMAEDDPRLRNLNGYGGSIAFSGDETAIAVTSPRGGVVQVMDCT
CCCCEEEECCCCCCCCCCCCCCCCEEECCCCCCEEEECCCCEEEEEECCCCCEEEEEECC
SGALQAEHALSDVCGLAPLKDGFLVSTGTGIMAQIGTEVTTLTQAPLAWDNHLIALSSAA
CCHHHHHHHHHHHHCCCCCCCCEEEEECCCEEEHHCCCEEEEECCCCCCCCEEEEEECCC
SAPRQP
CCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA