Definition Ruegeria sp. TM1040, complete genome.
Accession NC_008044
Length 3,200,938

Click here to switch to the map view.

The map label for this gene is bfr [H]

Identifier: 99082041

GI number: 99082041

Start: 2311530

End: 2311898

Strand: Direct

Name: bfr [H]

Synonym: TM1040_2201

Alternate gene names: 99082041

Gene position: 2311530-2311898 (Clockwise)

Preceding gene: 99082040

Following gene: 99082042

Centisome position: 72.21

GC content: 54.74

Gene sequence:

>369_bases
ATGGCCAAGAAGAGCCGCGAGGAAAGCATCGAAGAGATGAACCACGCGGACAAGCTGATCGACCGGATCATCTTTCTCGA
AGGTCATCCCAACCTGCAGACACTCGACCCGCTGCGCATCGGCCAATCCCCCAAGGAAACATTAGAATGCGATCTGGCCG
CCGAACAAGAAGCCCGCGCGCTTTATAAAGAAGCGGCAGAATACTGTAGGACCCATGGTGATTTCGTGTCTGAGGAGCTG
TTCAAAGAGCTACTCGCAGACGAGGAAGGCCATATTGATTTCCTGGAGACCCAGCTTGAATTGCACGACCGCGTTGGCGC
CGAAAACTACGCGCAGCTCAACGCCTCCAAGATGGACGAAGCCGAGTAA

Upstream 100 bases:

>100_bases
AGTCATCGAATATCTCAACAAGGCACTTAGGAGCGAGCTGACTGCTGTCAGCCAGTACTGGCTGCACTACCGGCTCCAGG
CGGACTGGGGCCTTGGGCAC

Downstream 100 bases:

>100_bases
CTCGGTACCAGTTCTCGGTGCGGCCCTCGCTCTGGTGCTGGCCGCACCGCTTCATGCGACGGACCGCCCTGCCCCCGCGG
CGCCTGGTTTGGCAGAGCCG

Product: Ferritin and Dps

Products: NA

Alternate protein names: BFR [H]

Number of amino acids: Translated: 122; Mature: 121

Protein sequence:

>122_residues
MAKKSREESIEEMNHADKLIDRIIFLEGHPNLQTLDPLRIGQSPKETLECDLAAEQEARALYKEAAEYCRTHGDFVSEEL
FKELLADEEGHIDFLETQLELHDRVGAENYAQLNASKMDEAE

Sequences:

>Translated_122_residues
MAKKSREESIEEMNHADKLIDRIIFLEGHPNLQTLDPLRIGQSPKETLECDLAAEQEARALYKEAAEYCRTHGDFVSEEL
FKELLADEEGHIDFLETQLELHDRVGAENYAQLNASKMDEAE
>Mature_121_residues
AKKSREESIEEMNHADKLIDRIIFLEGHPNLQTLDPLRIGQSPKETLECDLAAEQEARALYKEAAEYCRTHGDFVSEELF
KELLADEEGHIDFLETQLELHDRVGAENYAQLNASKMDEAE

Specific function: May perform analogous functions in iron detoxification and storage to that of animal ferritins [H]

COG id: COG2193

COG function: function code P; Bacterioferritin (cytochrome b1)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ferritin-like diiron domain [H]

Homologues:

Organism=Escherichia coli, GI1789733, Length=105, Percent_Identity=50.4761904761905, Blast_Score=104, Evalue=2e-24,

Paralogues:

None

Copy number: 1639 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002024
- InterPro:   IPR009040
- InterPro:   IPR012347
- InterPro:   IPR009078
- InterPro:   IPR008331 [H]

Pfam domain/function: PF00210 Ferritin [H]

EC number: NA

Molecular weight: Translated: 13976; Mature: 13844

Theoretical pI: Translated: 4.23; Mature: 4.23

Prosite motif: PS50905 FERRITIN_LIKE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKKSREESIEEMNHADKLIDRIIFLEGHPNLQTLDPLRIGQSPKETLECDLAAEQEARA
CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCCCHHHHHHHCCHHHHHHHH
LYKEAAEYCRTHGDFVSEELFKELLADEEGHIDFLETQLELHDRVGAENYAQLNASKMDE
HHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHCHHHCCC
AE
CC
>Mature Secondary Structure 
AKKSREESIEEMNHADKLIDRIIFLEGHPNLQTLDPLRIGQSPKETLECDLAAEQEARA
CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCCCHHHHHHHCCHHHHHHHH
LYKEAAEYCRTHGDFVSEELFKELLADEEGHIDFLETQLELHDRVGAENYAQLNASKMDE
HHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHCHHHCCC
AE
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8674981; 11752777 [H]