| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is fabG [H]
Identifier: 99082033
GI number: 99082033
Start: 2303499
End: 2304203
Strand: Direct
Name: fabG [H]
Synonym: TM1040_2193
Alternate gene names: 99082033
Gene position: 2303499-2304203 (Clockwise)
Preceding gene: 99082031
Following gene: 99082034
Centisome position: 71.96
GC content: 55.18
Gene sequence:
>705_bases ATGACAGTAGAAAAAGTAGCTCTGATTACGGCGGGTGGCAGCGGCATGGGCGCGAACGCTGCGCGCAAATTGGCAGATGA TGGGTTCAAGGTTGGCATCCTGTCTTCGTCTGGCAAGGGCGAAGCGCTTGGCGGTGAACTTGGCGGCTTTGGCGTAACGG GCTCCAATCTTGATGGAGAAGCGCTGAACGAATTGGTCGAGGGTGCGAAGGATCGTTGGGGCCGCATTGATGTCTTGGTG AACTCTGCTGGCCACGGACCAAAAGGTCCGGTTCTCGAGATCAGTGACGAGGATTGGCATCAAGGAATGGAAGTCTACCT GATGAACGTTATCCGTCCGACAAGGCTGATCACACCTGTGATGCAAGCGCAGGGCGGCGGGGCGATCATCAACATCTCAA CCTTCGCGGCATTCGAACCCGATCCCCTTTTTCCAACGTCTGGCGTCTTCCGGGCCGGACTTGCCGCATTCACAAAGCTC TACTCGGATAAGTATGCATCAGAAAACATTCGCATGAACAACGTCCTTCCGGGTTTCATAGACAGCCTGCCTGAGACCGA AGACCGCAAAGCACGTATTCCAATGGGACGTTACGGTTTCGCCTCGGAGGTGTCTTCTCTCATTTCGTGGCTCGCCTCGG AAAATGGTGGCTACATGACGGGACAAAACCTGTGTATCGACGGAGGGTTAACCCGTGCCGTCTGA
Upstream 100 bases:
>100_bases ATTCTGTAATAGTAATTCTACTGTCATATAACATCAATTCTGAATCCAAGTTTGCCAAAAAATGCACGATTTATGCCTCA AGCAAGAAAGGATGATCGAT
Downstream 100 bases:
>100_bases TACCTTGGCCCTTGTATCGACGCGCGAGCGCCTTGTCTTCGCGGTCAAGTGGGGCGCATCCGCCGTTCAGATCATGGGAT ACACTGCAACGGGGTTTGGC
Product: short-chain dehydrogenase/reductase SDR
Products: NA
Alternate protein names: 3-ketoacyl-acyl carrier protein reductase [H]
Number of amino acids: Translated: 234; Mature: 233
Protein sequence:
>234_residues MTVEKVALITAGGSGMGANAARKLADDGFKVGILSSSGKGEALGGELGGFGVTGSNLDGEALNELVEGAKDRWGRIDVLV NSAGHGPKGPVLEISDEDWHQGMEVYLMNVIRPTRLITPVMQAQGGGAIINISTFAAFEPDPLFPTSGVFRAGLAAFTKL YSDKYASENIRMNNVLPGFIDSLPETEDRKARIPMGRYGFASEVSSLISWLASENGGYMTGQNLCIDGGLTRAV
Sequences:
>Translated_234_residues MTVEKVALITAGGSGMGANAARKLADDGFKVGILSSSGKGEALGGELGGFGVTGSNLDGEALNELVEGAKDRWGRIDVLV NSAGHGPKGPVLEISDEDWHQGMEVYLMNVIRPTRLITPVMQAQGGGAIINISTFAAFEPDPLFPTSGVFRAGLAAFTKL YSDKYASENIRMNNVLPGFIDSLPETEDRKARIPMGRYGFASEVSSLISWLASENGGYMTGQNLCIDGGLTRAV >Mature_233_residues TVEKVALITAGGSGMGANAARKLADDGFKVGILSSSGKGEALGGELGGFGVTGSNLDGEALNELVEGAKDRWGRIDVLVN SAGHGPKGPVLEISDEDWHQGMEVYLMNVIRPTRLITPVMQAQGGGAIINISTFAAFEPDPLFPTSGVFRAGLAAFTKLY SDKYASENIRMNNVLPGFIDSLPETEDRKARIPMGRYGFASEVSSLISWLASENGGYMTGQNLCIDGGLTRAV
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI32483357, Length=243, Percent_Identity=30.8641975308642, Blast_Score=112, Evalue=4e-25, Organism=Homo sapiens, GI19923817, Length=249, Percent_Identity=29.718875502008, Blast_Score=93, Evalue=3e-19, Organism=Homo sapiens, GI40254992, Length=236, Percent_Identity=26.6949152542373, Blast_Score=90, Evalue=1e-18, Organism=Homo sapiens, GI5031737, Length=247, Percent_Identity=29.5546558704453, Blast_Score=84, Evalue=1e-16, Organism=Homo sapiens, GI126723750, Length=246, Percent_Identity=26.8292682926829, Blast_Score=83, Evalue=2e-16, Organism=Homo sapiens, GI126723191, Length=180, Percent_Identity=31.6666666666667, Blast_Score=80, Evalue=2e-15, Organism=Homo sapiens, GI66933014, Length=173, Percent_Identity=30.0578034682081, Blast_Score=78, Evalue=7e-15, Organism=Homo sapiens, GI15277342, Length=248, Percent_Identity=27.4193548387097, Blast_Score=74, Evalue=8e-14, Organism=Homo sapiens, GI33667109, Length=188, Percent_Identity=32.4468085106383, Blast_Score=71, Evalue=7e-13, Organism=Homo sapiens, GI7705925, Length=235, Percent_Identity=27.6595744680851, Blast_Score=66, Evalue=2e-11, Organism=Homo sapiens, GI10190704, Length=244, Percent_Identity=25.8196721311475, Blast_Score=66, Evalue=2e-11, Organism=Escherichia coli, GI1788459, Length=245, Percent_Identity=33.469387755102, Blast_Score=108, Evalue=2e-25, Organism=Escherichia coli, GI1787335, Length=236, Percent_Identity=30.0847457627119, Blast_Score=106, Evalue=2e-24, Organism=Escherichia coli, GI87082100, Length=249, Percent_Identity=32.9317269076305, Blast_Score=102, Evalue=1e-23, Organism=Escherichia coli, GI1789208, Length=241, Percent_Identity=31.1203319502075, Blast_Score=97, Evalue=7e-22, Organism=Escherichia coli, GI87082160, Length=240, Percent_Identity=29.1666666666667, Blast_Score=91, Evalue=6e-20, Organism=Escherichia coli, GI1787905, Length=241, Percent_Identity=25.7261410788382, Blast_Score=74, Evalue=6e-15, Organism=Escherichia coli, GI1786812, Length=241, Percent_Identity=25.3112033195021, Blast_Score=69, Evalue=2e-13, Organism=Escherichia coli, GI1790717, Length=195, Percent_Identity=26.6666666666667, Blast_Score=64, Evalue=1e-11, Organism=Caenorhabditis elegans, GI17561402, Length=247, Percent_Identity=30.7692307692308, Blast_Score=108, Evalue=2e-24, Organism=Caenorhabditis elegans, GI17562910, Length=259, Percent_Identity=30.5019305019305, Blast_Score=98, Evalue=3e-21, Organism=Caenorhabditis elegans, GI71994604, Length=249, Percent_Identity=32.1285140562249, Blast_Score=96, Evalue=2e-20, Organism=Caenorhabditis elegans, GI17560676, Length=243, Percent_Identity=24.6913580246914, Blast_Score=92, Evalue=2e-19, Organism=Caenorhabditis elegans, GI17555706, Length=243, Percent_Identity=30.4526748971193, Blast_Score=91, Evalue=6e-19, Organism=Caenorhabditis elegans, GI71994600, Length=250, Percent_Identity=28, Blast_Score=82, Evalue=2e-16, Organism=Caenorhabditis elegans, GI17560332, Length=260, Percent_Identity=28.4615384615385, Blast_Score=82, Evalue=2e-16, Organism=Caenorhabditis elegans, GI25147288, Length=245, Percent_Identity=28.5714285714286, Blast_Score=80, Evalue=1e-15, Organism=Caenorhabditis elegans, GI17551412, Length=263, Percent_Identity=28.1368821292776, Blast_Score=79, Evalue=2e-15, Organism=Caenorhabditis elegans, GI17559104, Length=259, Percent_Identity=25.0965250965251, Blast_Score=76, Evalue=2e-14, Organism=Caenorhabditis elegans, GI72000259, Length=259, Percent_Identity=27.7992277992278, Blast_Score=74, Evalue=8e-14, Organism=Caenorhabditis elegans, GI17538486, Length=258, Percent_Identity=26.7441860465116, Blast_Score=73, Evalue=1e-13, Organism=Caenorhabditis elegans, GI17508651, Length=253, Percent_Identity=26.4822134387352, Blast_Score=70, Evalue=1e-12, Organism=Caenorhabditis elegans, GI17562904, Length=258, Percent_Identity=26.7441860465116, Blast_Score=70, Evalue=1e-12, Organism=Caenorhabditis elegans, GI17562906, Length=260, Percent_Identity=26.9230769230769, Blast_Score=69, Evalue=1e-12, Organism=Caenorhabditis elegans, GI17562990, Length=260, Percent_Identity=25.3846153846154, Blast_Score=69, Evalue=2e-12, Organism=Caenorhabditis elegans, GI17544670, Length=264, Percent_Identity=26.8939393939394, Blast_Score=69, Evalue=2e-12, Organism=Caenorhabditis elegans, GI17538480, Length=271, Percent_Identity=26.9372693726937, Blast_Score=69, Evalue=3e-12, Organism=Caenorhabditis elegans, GI193204405, Length=263, Percent_Identity=25.4752851711027, Blast_Score=67, Evalue=7e-12, Organism=Caenorhabditis elegans, GI17538182, Length=246, Percent_Identity=27.2357723577236, Blast_Score=67, Evalue=7e-12, Organism=Caenorhabditis elegans, GI17562908, Length=260, Percent_Identity=26.5384615384615, Blast_Score=67, Evalue=8e-12, Organism=Caenorhabditis elegans, GI17560150, Length=261, Percent_Identity=24.904214559387, Blast_Score=66, Evalue=2e-11, Organism=Caenorhabditis elegans, GI17563726, Length=256, Percent_Identity=25, Blast_Score=64, Evalue=6e-11, Organism=Drosophila melanogaster, GI21355319, Length=245, Percent_Identity=29.7959183673469, Blast_Score=103, Evalue=7e-23, Organism=Drosophila melanogaster, GI23397609, Length=243, Percent_Identity=29.6296296296296, Blast_Score=95, Evalue=5e-20, Organism=Drosophila melanogaster, GI24639444, Length=244, Percent_Identity=29.5081967213115, Blast_Score=88, Evalue=5e-18, Organism=Drosophila melanogaster, GI28571526, Length=249, Percent_Identity=30.1204819277108, Blast_Score=79, Evalue=2e-15, Organism=Drosophila melanogaster, GI21357041, Length=249, Percent_Identity=27.3092369477912, Blast_Score=76, Evalue=2e-14, Organism=Drosophila melanogaster, GI24644339, Length=248, Percent_Identity=27.8225806451613, Blast_Score=72, Evalue=3e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011284 - InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 - InterPro: IPR020904 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: =1.1.1.100 [H]
Molecular weight: Translated: 24616; Mature: 24485
Theoretical pI: Translated: 4.67; Mature: 4.67
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTVEKVALITAGGSGMGANAARKLADDGFKVGILSSSGKGEALGGELGGFGVTGSNLDGE CCCCEEEEEEECCCCCCHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCHH ALNELVEGAKDRWGRIDVLVNSAGHGPKGPVLEISDEDWHQGMEVYLMNVIRPTRLITPV HHHHHHHHHHHCCCEEEEEEECCCCCCCCCEEEECCCHHHCCHHHHHHHHHHHHHHHHHH MQAQGGGAIINISTFAAFEPDPLFPTSGVFRAGLAAFTKLYSDKYASENIRMNNVLPGFI HHCCCCCEEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEECCCCCHHH DSLPETEDRKARIPMGRYGFASEVSSLISWLASENGGYMTGQNLCIDGGLTRAV HCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEECCCCEEEECCHHCCC >Mature Secondary Structure TVEKVALITAGGSGMGANAARKLADDGFKVGILSSSGKGEALGGELGGFGVTGSNLDGE CCCEEEEEEECCCCCCHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCHH ALNELVEGAKDRWGRIDVLVNSAGHGPKGPVLEISDEDWHQGMEVYLMNVIRPTRLITPV HHHHHHHHHHHCCCEEEEEEECCCCCCCCCEEEECCCHHHCCHHHHHHHHHHHHHHHHHH MQAQGGGAIINISTFAAFEPDPLFPTSGVFRAGLAAFTKLYSDKYASENIRMNNVLPGFI HHCCCCCEEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEECCCCCHHH DSLPETEDRKARIPMGRYGFASEVSSLISWLASENGGYMTGQNLCIDGGLTRAV HCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEECCCCEEEECCHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 10360571 [H]