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The map label for this gene is ycaD [C]

Identifier: 99082031

GI number: 99082031

Start: 2301194

End: 2302420

Strand: Direct

Name: ycaD [C]

Synonym: TM1040_2191

Alternate gene names: 99082031

Gene position: 2301194-2302420 (Clockwise)

Preceding gene: 99082029

Following gene: 99082033

Centisome position: 71.89

GC content: 63.16

Gene sequence:

>1227_bases
ATGCGCACGATCCTCTCTTTTGCCGCCCTCTTTCTTTCCGTGATTTTGCTTCAGCTCTCGACCGGAGGTGTGGGGCCGCT
GGATGCCATTTCCGGCGCTGCGATGGGGTTTGACAACCGCCAGATCGGCCTTCTGGGCTCGGCGCATTTCTTTGGCTTCT
TTATCGGCTGCTGGTGGACCCCGCGCCTTATGGGTCGTGTCGGACATTCGCGCGCTTTTGCGGTTTGCACGGCACTTGGC
GCGATGGGCCTCTTGGCGCATACGCTCACGGACGATCCCTACGCATGGGCCGCCATGCGCATCGCATCTGGCCTCTGTGT
CGCGGGCTGCTACACGGTCATCGAGGCCTGGATCAACGCAAAGGTCACCAATGAGAACCGGGGCCGCACCTCCGGTCTCT
ATCGTATTGCCGACACCAGTGCGTCTCTGGCGGCGCAGCTGTTGATCGCGGTGCTGCCGCCTGCGCATTACATCTCGTAT
AACCTGCTGGCGATCCTGTGCTGCGCAACGCTGCTGCCGCTGATGATGACCCGCGCGAGCCAGCCCGAGATGCCCGCCGC
CCCGCGCCTGAGACCCCGTCTGGCCTGGCGTTGTTCACCCCTCGGGGTGGCCGGCGTGATCGTCTCCGCCCTGAGTGGCG
CCTCCTTCAGGATGGTTGGCCCGATCTACGGTCAGGAAGTCGGACTGGTGATCGACCAGATCGCCTTTTTCCTTGCCGCC
TTCGTTCTGGGCGGCGCGCTCGCGCAGTACCCCGTGGGCTGGCTTGCGGATAAATTCGATCGTCGCTGGGTGCTCATCTG
GCTCTCAGGCGTCTCGATGATTGCCTGCGCCGTGACCCTGCCTGCAAGCGGTGGCGGCACGATTGCCATCATGGCGTCGG
CGGCTTTCTTCGGCCTGACGACAGTGCCGATCTTTTCTGTCTCTGCCGCGCATGCCAATGACTTTGCCACCTCCGAAGAG
CGGGTGGAACTCTCAGCGGCCTTGATGTTCTTCTACGCCACGGGCGCGATTGCCGCACCCTTTATCGCCTCGGCCCTCAT
TGAGGCCTTCGGGCCAGGGGCGCTATTTGTCTTTATCGCAGTGGGGCATGCGGGGTTGATCGTCTTTGGCCTTGCAAGGA
TGCGCAGCCGCGCCACCCCAACCGAACGCACCCGCTACGTCTATGCGCCGCGCACGTCATTCACGATCGGCAAGATGCTG
AAACGCGCCCGTGAGGGGCGGCAATGA

Upstream 100 bases:

>100_bases
TGCGATCTGCGCCGCATTGGCCACAGCACATGAAAAACGACCCCCGAACGTCGAAAACGCAACTGCACCGATCTGGCAAA
TCCCTATGGTCAGCCCTGCT

Downstream 100 bases:

>100_bases
GAGTGCCCAACTGTCAAACGCGAGGCAAACCTGTCTGTCTGAGATTGGGACCTTGTTTCCGTTCGTCCGAGTGATCTAAA
TGGCCGCTTTGTTTCAAGGC

Product: major facilitator transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 408; Mature: 408

Protein sequence:

>408_residues
MRTILSFAALFLSVILLQLSTGGVGPLDAISGAAMGFDNRQIGLLGSAHFFGFFIGCWWTPRLMGRVGHSRAFAVCTALG
AMGLLAHTLTDDPYAWAAMRIASGLCVAGCYTVIEAWINAKVTNENRGRTSGLYRIADTSASLAAQLLIAVLPPAHYISY
NLLAILCCATLLPLMMTRASQPEMPAAPRLRPRLAWRCSPLGVAGVIVSALSGASFRMVGPIYGQEVGLVIDQIAFFLAA
FVLGGALAQYPVGWLADKFDRRWVLIWLSGVSMIACAVTLPASGGGTIAIMASAAFFGLTTVPIFSVSAAHANDFATSEE
RVELSAALMFFYATGAIAAPFIASALIEAFGPGALFVFIAVGHAGLIVFGLARMRSRATPTERTRYVYAPRTSFTIGKML
KRAREGRQ

Sequences:

>Translated_408_residues
MRTILSFAALFLSVILLQLSTGGVGPLDAISGAAMGFDNRQIGLLGSAHFFGFFIGCWWTPRLMGRVGHSRAFAVCTALG
AMGLLAHTLTDDPYAWAAMRIASGLCVAGCYTVIEAWINAKVTNENRGRTSGLYRIADTSASLAAQLLIAVLPPAHYISY
NLLAILCCATLLPLMMTRASQPEMPAAPRLRPRLAWRCSPLGVAGVIVSALSGASFRMVGPIYGQEVGLVIDQIAFFLAA
FVLGGALAQYPVGWLADKFDRRWVLIWLSGVSMIACAVTLPASGGGTIAIMASAAFFGLTTVPIFSVSAAHANDFATSEE
RVELSAALMFFYATGAIAAPFIASALIEAFGPGALFVFIAVGHAGLIVFGLARMRSRATPTERTRYVYAPRTSFTIGKML
KRAREGRQ
>Mature_408_residues
MRTILSFAALFLSVILLQLSTGGVGPLDAISGAAMGFDNRQIGLLGSAHFFGFFIGCWWTPRLMGRVGHSRAFAVCTALG
AMGLLAHTLTDDPYAWAAMRIASGLCVAGCYTVIEAWINAKVTNENRGRTSGLYRIADTSASLAAQLLIAVLPPAHYISY
NLLAILCCATLLPLMMTRASQPEMPAAPRLRPRLAWRCSPLGVAGVIVSALSGASFRMVGPIYGQEVGLVIDQIAFFLAA
FVLGGALAQYPVGWLADKFDRRWVLIWLSGVSMIACAVTLPASGGGTIAIMASAAFFGLTTVPIFSVSAAHANDFATSEE
RVELSAALMFFYATGAIAAPFIASALIEAFGPGALFVFIAVGHAGLIVFGLARMRSRATPTERTRYVYAPRTSFTIGKML
KRAREGRQ

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the major facilitator superfamily. YcaD (TC 2.A.1.26) family [H]

Homologues:

Organism=Escherichia coli, GI1787126, Length=334, Percent_Identity=27.5449101796407, Blast_Score=113, Evalue=2e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020846
- InterPro:   IPR011701
- InterPro:   IPR016196 [H]

Pfam domain/function: PF07690 MFS_1 [H]

EC number: NA

Molecular weight: Translated: 43346; Mature: 43346

Theoretical pI: Translated: 9.75; Mature: 9.75

Prosite motif: PS50850 MFS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRTILSFAALFLSVILLQLSTGGVGPLDAISGAAMGFDNRQIGLLGSAHFFGFFIGCWWT
CHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCHHCCCCCCEEEEEECHHHHHHHHHHHHH
PRLMGRVGHSRAFAVCTALGAMGLLAHTLTDDPYAWAAMRIASGLCVAGCYTVIEAWINA
HHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHHHHCC
KVTNENRGRTSGLYRIADTSASLAAQLLIAVLPPAHYISYNLLAILCCATLLPLMMTRAS
EECCCCCCCCCCEEEEECCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCC
QPEMPAAPRLRPRLAWRCSPLGVAGVIVSALSGASFRMVGPIYGQEVGLVIDQIAFFLAA
CCCCCCCCCCCCCHHEECCCCHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHH
FVLGGALAQYPVGWLADKFDRRWVLIWLSGVSMIACAVTLPASGGGTIAIMASAAFFGLT
HHHCCHHHHCCHHHHHHHHCCCEEEEEECHHHHHHHHEEECCCCCCEEEEEEHHHHHHHH
TVPIFSVSAAHANDFATSEERVELSAALMFFYATGAIAAPFIASALIEAFGPGALFVFIA
HHHHHEEEHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
VGHAGLIVFGLARMRSRATPTERTRYVYAPRTSFTIGKMLKRAREGRQ
HHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCHHHHHHHHHHHCCCC
>Mature Secondary Structure
MRTILSFAALFLSVILLQLSTGGVGPLDAISGAAMGFDNRQIGLLGSAHFFGFFIGCWWT
CHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCHHCCCCCCEEEEEECHHHHHHHHHHHHH
PRLMGRVGHSRAFAVCTALGAMGLLAHTLTDDPYAWAAMRIASGLCVAGCYTVIEAWINA
HHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHHHHCC
KVTNENRGRTSGLYRIADTSASLAAQLLIAVLPPAHYISYNLLAILCCATLLPLMMTRAS
EECCCCCCCCCCEEEEECCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCC
QPEMPAAPRLRPRLAWRCSPLGVAGVIVSALSGASFRMVGPIYGQEVGLVIDQIAFFLAA
CCCCCCCCCCCCCHHEECCCCHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHH
FVLGGALAQYPVGWLADKFDRRWVLIWLSGVSMIACAVTLPASGGGTIAIMASAAFFGLT
HHHCCHHHHCCHHHHHHHHCCCEEEEEECHHHHHHHHEEECCCCCCEEEEEEHHHHHHHH
TVPIFSVSAAHANDFATSEERVELSAALMFFYATGAIAAPFIASALIEAFGPGALFVFIA
HHHHHEEEHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
VGHAGLIVFGLARMRSRATPTERTRYVYAPRTSFTIGKMLKRAREGRQ
HHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA