| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
Click here to switch to the map view.
The map label for this gene is 99081997
Identifier: 99081997
GI number: 99081997
Start: 2266835
End: 2267326
Strand: Reverse
Name: 99081997
Synonym: TM1040_2157
Alternate gene names: NA
Gene position: 2267326-2266835 (Counterclockwise)
Preceding gene: 99081998
Following gene: 99081995
Centisome position: 70.83
GC content: 62.6
Gene sequence:
>492_bases ATGAGCCACGAAATCGACAGCGGCGAAGTACTCGCCACCGTGGAAGCATCGCCAGCCCGCCGGGTGATTGGCGTGGCCAT GTTGATCGGGCTGGGGCTGATGACCCTCTATGTCGCCATGGCGAGCACACCGGGCGTGGCATGGCAGGGGTTCCTGATGC TTGTGTCGGGCTTGGCGCTCTGGATGGGCTATCGCATGTGGCATGCCACCGCGCATCGCATCGAGCTCACGGCGGCGGGG CTGCGCTGTTCGGATGGCACCGAGATCATTCGCATCCAGGATCTGCAGCATCTTGATCGCGGCTTTTTTGCGTTCAAGCC TTCAAACGGGTTCCTTATGCGCAGCACGACATCTGCAGAGCGCTGCTGGTATCCCGGTCTTTGGTGGCGCATGGGACGGC GCATCGGTGTGGGCGGGGTGACTCCCGGCTCCCAAACCAAGACCATGACCGAGATTCTTGCGGCACTGATGGTCGAGCGC GACGCAGGCTGA
Upstream 100 bases:
>100_bases CTCGGGGCCCTGAGCTGATCCGTCGCGCGATCACCAAAAGGGCTGTTCGATCCCGGTGTTTTTCGCTAACCCATCGCCAG TGATCCGAGGGAGACCGTAA
Downstream 100 bases:
>100_bases GCGGCTGGTGACCGCGCCAAAGATCGCACCACAGATGATGCGCGCCTTTTTAGGGGCTTATCCGGTCTTTGGCATCTGGC GCGCTGCATTCCAGTCCTGC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 163; Mature: 162
Protein sequence:
>163_residues MSHEIDSGEVLATVEASPARRVIGVAMLIGLGLMTLYVAMASTPGVAWQGFLMLVSGLALWMGYRMWHATAHRIELTAAG LRCSDGTEIIRIQDLQHLDRGFFAFKPSNGFLMRSTTSAERCWYPGLWWRMGRRIGVGGVTPGSQTKTMTEILAALMVER DAG
Sequences:
>Translated_163_residues MSHEIDSGEVLATVEASPARRVIGVAMLIGLGLMTLYVAMASTPGVAWQGFLMLVSGLALWMGYRMWHATAHRIELTAAG LRCSDGTEIIRIQDLQHLDRGFFAFKPSNGFLMRSTTSAERCWYPGLWWRMGRRIGVGGVTPGSQTKTMTEILAALMVER DAG >Mature_162_residues SHEIDSGEVLATVEASPARRVIGVAMLIGLGLMTLYVAMASTPGVAWQGFLMLVSGLALWMGYRMWHATAHRIELTAAGL RCSDGTEIIRIQDLQHLDRGFFAFKPSNGFLMRSTTSAERCWYPGLWWRMGRRIGVGGVTPGSQTKTMTEILAALMVERD AG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 17876; Mature: 17745
Theoretical pI: Translated: 8.75; Mature: 8.75
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 6.7 %Met (Translated Protein) 8.0 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 6.2 %Met (Mature Protein) 7.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSHEIDSGEVLATVEASPARRVIGVAMLIGLGLMTLYVAMASTPGVAWQGFLMLVSGLAL CCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH WMGYRMWHATAHRIELTAAGLRCSDGTEIIRIQDLQHLDRGFFAFKPSNGFLMRSTTSAE HHHHHHHHHHHHEEEEEECCEEECCCCCEEEEHHHHHHCCCEEEEECCCCEEEECCCCCC RCWYPGLWWRMGRRIGVGGVTPGSQTKTMTEILAALMVERDAG CCCCCCHHHHCCCEECCCCCCCCCCHHHHHHHHHHHHHHCCCC >Mature Secondary Structure SHEIDSGEVLATVEASPARRVIGVAMLIGLGLMTLYVAMASTPGVAWQGFLMLVSGLAL CCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH WMGYRMWHATAHRIELTAAGLRCSDGTEIIRIQDLQHLDRGFFAFKPSNGFLMRSTTSAE HHHHHHHHHHHHEEEEEECCEEECCCCCEEEEHHHHHHCCCEEEEECCCCEEEECCCCCC RCWYPGLWWRMGRRIGVGGVTPGSQTKTMTEILAALMVERDAG CCCCCCHHHHCCCEECCCCCCCCCCHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA