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The map label for this gene is ycjC [C]

Identifier: 99081998

GI number: 99081998

Start: 2267409

End: 2268128

Strand: Reverse

Name: ycjC [C]

Synonym: TM1040_2158

Alternate gene names: 99081998

Gene position: 2268128-2267409 (Counterclockwise)

Preceding gene: 99082001

Following gene: 99081997

Centisome position: 70.86

GC content: 57.36

Gene sequence:

>720_bases
ATGCATACTTTCACCCAAATCGATCTCGCTTCCGGCCTATGGGAAATTTTTGGTAAAATAAGAAAAAATATGTCTGAAAC
AACAGGAAAAGAGTCTTCGTTTTCCGCCGACACGCATTCGGCGGTGCTTGATGAAGGAGAAAAACAGCGCATACGACTTG
AACTCGGCAGGCGAGTCAAAGGCTTACGCAGCGCTGCGGGGATGACGCTCGAGCAAGCTGCTGAACGCACGCGACTTGCC
GTTTCGACGATCTACAAGATCGAAAACGGCAAAGTATCCCCGAGTTTTGAGAATCTGCTGCGACTCGCGCGGGGCTATGG
CGTTGGACTGGAAAAGCTCATCGCTGAACCTGAAGACGAGGTTCACACCACCCGGCTCACTGTGACGCGGGCGGGGCAGG
GGCGCTCGGTCGAGGGCAAGGTCTATGATTATGAAGTGCTGTGCAACGGGCTCACCGGGAAGAAGATCATCCCGCTGATC
GGCACCATCTGCGCCAAGGGCGAAGGCGTGCCTGCCCACTTGGACCGCCATGATGGCGAGGAGCTGTTGCTGGTGCTCGA
AGGGGAGGTCGAACTGCGGGTGGAGCATTACGAACCAGTGATCCTCGCCGCCGGAGACTGCGCCTATTACGACAGTACCC
TGCGCCATGGTGTGCGTAGCACCGGCCCTGACAAAGCGCGGGTGTTCTGGGCCTGTACCCATCTCGGGGCCCTGAGCTGA

Upstream 100 bases:

>100_bases
GCGACCCGGCGAGGCTCAGGTTTGGACTGCGTACTGCGGGGTTGGGCCTGGCGGTGTAGGCAGGTTTCATGGCTATTTGC
TGGCCTCGCCTGTGTTGGTC

Downstream 100 bases:

>100_bases
TCCGTCGCGCGATCACCAAAAGGGCTGTTCGATCCCGGTGTTTTTCGCTAACCCATCGCCAGTGATCCGAGGGAGACCGT
AAATGAGCCACGAAATCGAC

Product: XRE family transcriptional regulator

Products: NA

Alternate protein names: XRE Family Transcriptional Regulator; Transcriptional Regulator XRE Family; Transcriptional Regulator HTH_3 Family; Helix-Turn-Helix Family; Helix-Turn-Helix Domain-Containing Protein; Regulatory Protein; Transcriptional Regulator Protein; Transcriptional Regulator Xre Family; Transcription Regulator; XRE Family-Like Protein; Transcriptional Regulator XRE Family With Cupin Sensor; HTH_3family Transcriptional Regulator

Number of amino acids: Translated: 239; Mature: 239

Protein sequence:

>239_residues
MHTFTQIDLASGLWEIFGKIRKNMSETTGKESSFSADTHSAVLDEGEKQRIRLELGRRVKGLRSAAGMTLEQAAERTRLA
VSTIYKIENGKVSPSFENLLRLARGYGVGLEKLIAEPEDEVHTTRLTVTRAGQGRSVEGKVYDYEVLCNGLTGKKIIPLI
GTICAKGEGVPAHLDRHDGEELLLVLEGEVELRVEHYEPVILAAGDCAYYDSTLRHGVRSTGPDKARVFWACTHLGALS

Sequences:

>Translated_239_residues
MHTFTQIDLASGLWEIFGKIRKNMSETTGKESSFSADTHSAVLDEGEKQRIRLELGRRVKGLRSAAGMTLEQAAERTRLA
VSTIYKIENGKVSPSFENLLRLARGYGVGLEKLIAEPEDEVHTTRLTVTRAGQGRSVEGKVYDYEVLCNGLTGKKIIPLI
GTICAKGEGVPAHLDRHDGEELLLVLEGEVELRVEHYEPVILAAGDCAYYDSTLRHGVRSTGPDKARVFWACTHLGALS
>Mature_239_residues
MHTFTQIDLASGLWEIFGKIRKNMSETTGKESSFSADTHSAVLDEGEKQRIRLELGRRVKGLRSAAGMTLEQAAERTRLA
VSTIYKIENGKVSPSFENLLRLARGYGVGLEKLIAEPEDEVHTTRLTVTRAGQGRSVEGKVYDYEVLCNGLTGKKIIPLI
GTICAKGEGVPAHLDRHDGEELLLVLEGEVELRVEHYEPVILAAGDCAYYDSTLRHGVRSTGPDKARVFWACTHLGALS

Specific function: Unknown

COG id: COG1396

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 26264; Mature: 26264

Theoretical pI: Translated: 6.72; Mature: 6.72

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHTFTQIDLASGLWEIFGKIRKNMSETTGKESSFSADTHSAVLDEGEKQRIRLELGRRVK
CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHH
GLRSAAGMTLEQAAERTRLAVSTIYKIENGKVSPSFENLLRLARGYGVGLEKLIAEPEDE
HHHHHHCCHHHHHHHHHHHHHHHHEEECCCCCCCCHHHHHHHHHCCCCCHHHHHCCCCCH
VHTTRLTVTRAGQGRSVEGKVYDYEVLCNGLTGKKIIPLIGTICAKGEGVPAHLDRHDGE
HEEEEEEEEECCCCCCCCCCEEEHHHEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCC
ELLLVLEGEVELRVEHYEPVILAAGDCAYYDSTLRHGVRSTGPDKARVFWACTHLGALS
EEEEEEECCEEEEEECCCEEEEECCCHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCC
>Mature Secondary Structure
MHTFTQIDLASGLWEIFGKIRKNMSETTGKESSFSADTHSAVLDEGEKQRIRLELGRRVK
CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHH
GLRSAAGMTLEQAAERTRLAVSTIYKIENGKVSPSFENLLRLARGYGVGLEKLIAEPEDE
HHHHHHCCHHHHHHHHHHHHHHHHEEECCCCCCCCHHHHHHHHHCCCCCHHHHHCCCCCH
VHTTRLTVTRAGQGRSVEGKVYDYEVLCNGLTGKKIIPLIGTICAKGEGVPAHLDRHDGE
HEEEEEEEEECCCCCCCCCCEEEHHHEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCC
ELLLVLEGEVELRVEHYEPVILAAGDCAYYDSTLRHGVRSTGPDKARVFWACTHLGALS
EEEEEEECCEEEEEECCCEEEEECCCHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA