Definition Ruegeria sp. TM1040, complete genome.
Accession NC_008044
Length 3,200,938

Click here to switch to the map view.

The map label for this gene is 99081949

Identifier: 99081949

GI number: 99081949

Start: 2213973

End: 2214914

Strand: Reverse

Name: 99081949

Synonym: TM1040_2109

Alternate gene names: NA

Gene position: 2214914-2213973 (Counterclockwise)

Preceding gene: 99081950

Following gene: 99081948

Centisome position: 69.2

GC content: 62.53

Gene sequence:

>942_bases
ATGATCCGATCTCTTGCGCTGGCTCTGTGCGCCGCGATTGCGCTTTCTGCGACGGGCGCTGCATTTGCAGCCGATCCGGT
CCGAGCAGAACCTTTGAAACGTCATCGCATTGGCTATGGTCACCTGATCGACAATGATCTGATCGGGGATGGAAAGGACC
GCTGGCGCACCGGTTCGGTGGCGTCGTCGCGGATCTATGGCTTCGGGTGGGACGGTCAGGCTCCTGCGGGGTTCGGCGAA
CTTCTGGAACTGCGTTTCCTCGGTCAGATTCTGGCGCCAGATAACCTGCGCTCTCCGGCAGCCGGAGAGCGACCCTGGGC
TGGGGCGTTGTCGCTCGGGGTGCATACCCATATGCAGCGCGGCACGCTGGAGCTCTCGCTCGGTGGGGATCTCGTATTCA
TCGGCCCGCAAACAGGACTCGATGACTTTCAGGATGCGCTGCACGACCTCGCCAATACCACGCGCCCATCCGACGCGGTA
CGAGCGGCGCAGGTCTCCAATACCATTCGCCCGACCCTGGTGGCCGAGGTTGGCAGAACCATTTCTCTTGGCCCGCGCAG
TCACCTTCGCCCCTTTGTCGAAGCGCGGGCAGGGGATGAGACCTTGGTGCGCATTGGCGCGGATTGGACCTTCGGGTCGG
CCGGCATCGGCGAGCTCATGGTGCGCGACCCTGTCACCGGACAACGCTATAGAACCATGTATGAAACGCGCGGCATCAGC
TTCACGCTTGGGGCAGATGTGGCGCATGTGGCGCAATCCGTCTACCTGCCCGAGGGACGGGGCTATGATCTGACCGGACG
CCGCGATCGCCTGCGCGCGGGGCTGCATTGGCAAGGCGATGGGCGCGACTTCTTTTACGGGATTACCTATCTGGGCAAAG
AGTTCTCCAGCCAGCCCGAAGGGCAACTGGTTGGCTCTCTGCGTCTGCGCTGGACCTTTTAA

Upstream 100 bases:

>100_bases
CTTTGCGCGCATCTGTGGCGCGGCTGCACTAGTGGGGTGCTGCGAGGATGGTTAATCAGATGTAACCAACCAAAGACCCT
CTCCTCCAGCAGGTACACCC

Downstream 100 bases:

>100_bases
AGTGATTTTTTCGCCACGGTGCGCGTGTGAAAAGGACCCTCTGGTCAGACATTAAGACTTTCGCCCAGGGGTCTGATTTG
TTAACGCTTCGTTAAGGATT

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 313; Mature: 313

Protein sequence:

>313_residues
MIRSLALALCAAIALSATGAAFAADPVRAEPLKRHRIGYGHLIDNDLIGDGKDRWRTGSVASSRIYGFGWDGQAPAGFGE
LLELRFLGQILAPDNLRSPAAGERPWAGALSLGVHTHMQRGTLELSLGGDLVFIGPQTGLDDFQDALHDLANTTRPSDAV
RAAQVSNTIRPTLVAEVGRTISLGPRSHLRPFVEARAGDETLVRIGADWTFGSAGIGELMVRDPVTGQRYRTMYETRGIS
FTLGADVAHVAQSVYLPEGRGYDLTGRRDRLRAGLHWQGDGRDFFYGITYLGKEFSSQPEGQLVGSLRLRWTF

Sequences:

>Translated_313_residues
MIRSLALALCAAIALSATGAAFAADPVRAEPLKRHRIGYGHLIDNDLIGDGKDRWRTGSVASSRIYGFGWDGQAPAGFGE
LLELRFLGQILAPDNLRSPAAGERPWAGALSLGVHTHMQRGTLELSLGGDLVFIGPQTGLDDFQDALHDLANTTRPSDAV
RAAQVSNTIRPTLVAEVGRTISLGPRSHLRPFVEARAGDETLVRIGADWTFGSAGIGELMVRDPVTGQRYRTMYETRGIS
FTLGADVAHVAQSVYLPEGRGYDLTGRRDRLRAGLHWQGDGRDFFYGITYLGKEFSSQPEGQLVGSLRLRWTF
>Mature_313_residues
MIRSLALALCAAIALSATGAAFAADPVRAEPLKRHRIGYGHLIDNDLIGDGKDRWRTGSVASSRIYGFGWDGQAPAGFGE
LLELRFLGQILAPDNLRSPAAGERPWAGALSLGVHTHMQRGTLELSLGGDLVFIGPQTGLDDFQDALHDLANTTRPSDAV
RAAQVSNTIRPTLVAEVGRTISLGPRSHLRPFVEARAGDETLVRIGADWTFGSAGIGELMVRDPVTGQRYRTMYETRGIS
FTLGADVAHVAQSVYLPEGRGYDLTGRRDRLRAGLHWQGDGRDFFYGITYLGKEFSSQPEGQLVGSLRLRWTF

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 33987; Mature: 33987

Theoretical pI: Translated: 7.82; Mature: 7.82

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIRSLALALCAAIALSATGAAFAADPVRAEPLKRHRIGYGHLIDNDLIGDGKDRWRTGSV
CHHHHHHHHHHHHHHHCCCCHHCCCCCCCCCHHHHCCCCCEEECCCCCCCCHHHCCCCCC
ASSRIYGFGWDGQAPAGFGELLELRFLGQILAPDNLRSPAAGERPWAGALSLGVHTHMQR
CCCEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHCC
GTLELSLGGDLVFIGPQTGLDDFQDALHDLANTTRPSDAVRAAQVSNTIRPTLVAEVGRT
CEEEEEECCCEEEECCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHCCCE
ISLGPRSHLRPFVEARAGDETLVRIGADWTFGSAGIGELMVRDPVTGQRYRTMYETRGIS
EECCCHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCEEEECCCCCHHHHHHHHHCCEE
FTLGADVAHVAQSVYLPEGRGYDLTGRRDRLRAGLHWQGDGRDFFYGITYLGKEFSSQPE
EEECCCHHHHHHHHCCCCCCCCCCCCCHHHHHCCCEECCCCCEEEEHHHHHHHHHCCCCC
GQLVGSLRLRWTF
CEEEEEEEEEEEC
>Mature Secondary Structure
MIRSLALALCAAIALSATGAAFAADPVRAEPLKRHRIGYGHLIDNDLIGDGKDRWRTGSV
CHHHHHHHHHHHHHHHCCCCHHCCCCCCCCCHHHHCCCCCEEECCCCCCCCHHHCCCCCC
ASSRIYGFGWDGQAPAGFGELLELRFLGQILAPDNLRSPAAGERPWAGALSLGVHTHMQR
CCCEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHCC
GTLELSLGGDLVFIGPQTGLDDFQDALHDLANTTRPSDAVRAAQVSNTIRPTLVAEVGRT
CEEEEEECCCEEEECCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHCCCE
ISLGPRSHLRPFVEARAGDETLVRIGADWTFGSAGIGELMVRDPVTGQRYRTMYETRGIS
EECCCHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCEEEECCCCCHHHHHHHHHCCEE
FTLGADVAHVAQSVYLPEGRGYDLTGRRDRLRAGLHWQGDGRDFFYGITYLGKEFSSQPE
EEECCCHHHHHHHHCCCCCCCCCCCCCHHHHHCCCEECCCCCEEEEHHHHHHHHHCCCCC
GQLVGSLRLRWTF
CEEEEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA