| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is 99081950
Identifier: 99081950
GI number: 99081950
Start: 2215089
End: 2215490
Strand: Reverse
Name: 99081950
Synonym: TM1040_2110
Alternate gene names: NA
Gene position: 2215490-2215089 (Counterclockwise)
Preceding gene: 99081952
Following gene: 99081949
Centisome position: 69.21
GC content: 60.95
Gene sequence:
>402_bases ATGGCTCAGCTCAAGACCTCATCGGCACAGATGGTTGCCGCCGCCCGCGCCCGCATTGCAGAGATCGACGCCGCCGCCGC CATTGCGCTGCATGATGCGCCCGATGTGGTGTTTGTCGATCTGCGCGATGTGCGTGAGCGTCAACGCATGGGATTCATCC CTGGTAGCTTTCACTGTCCAAGAGGCATGCTGGAGTTCTGGGTCGATCCCGACAGCCCCTATTTCAAAGAGATCTTTGCC GAGGAGAAGCGGTTTATCTTCCATTGCGCCTCTGGCTGGCGCTCGGCGCTCTCGGTTGCGCTCTTGCAGGATATGGGGTT CGAGGCCGCGCATATCAGCGATGGTTTTTCCGGCTGGCGCTCTGCTGGCGGGCCGGTGGTAGAGCCTGTGGACGAGTCCT GA
Upstream 100 bases:
>100_bases ATCGCTGTGAACAGCAGAGCGCACGGCGTGGCGCAGGCGGGGTGGTCTTGCCGCCCCGCGCCTCCTAGAGTGTTGAGGTC AAACGGTTCAGGAGGCCTTC
Downstream 100 bases:
>100_bases ACTGCGCCGGCAGAGCCGCATAAGGCGTTCAAAACACGCCCAAAACAGGGCTATTCCAAGGCAGCGGAGTCGGGCTTTGC GCGCATCTGTGGCGCGGCTG
Product: rhodanese-like protein
Products: NA
Alternate protein names: Rhodanese-Like Protein; Rhodanese Domain-Containing Protein; Rhodanese Domain Protein Sulfur Transferase; Rhodanese-Related Sulfurtransferase; Sulfide Dehydrogenase; Beta-Lactamase-Like; Rhodanese-Like Domain Protein; Bifunctional Glyoxylase/Rhodanese-Like Sulfurtransferase; Beta-Lactamase Domain Protein; Rhodanese-Like Domain-Containing Protein
Number of amino acids: Translated: 133; Mature: 132
Protein sequence:
>133_residues MAQLKTSSAQMVAAARARIAEIDAAAAIALHDAPDVVFVDLRDVRERQRMGFIPGSFHCPRGMLEFWVDPDSPYFKEIFA EEKRFIFHCASGWRSALSVALLQDMGFEAAHISDGFSGWRSAGGPVVEPVDES
Sequences:
>Translated_133_residues MAQLKTSSAQMVAAARARIAEIDAAAAIALHDAPDVVFVDLRDVRERQRMGFIPGSFHCPRGMLEFWVDPDSPYFKEIFA EEKRFIFHCASGWRSALSVALLQDMGFEAAHISDGFSGWRSAGGPVVEPVDES >Mature_132_residues AQLKTSSAQMVAAARARIAEIDAAAAIALHDAPDVVFVDLRDVRERQRMGFIPGSFHCPRGMLEFWVDPDSPYFKEIFAE EKRFIFHCASGWRSALSVALLQDMGFEAAHISDGFSGWRSAGGPVVEPVDES
Specific function: Unknown
COG id: COG0607
COG function: function code P; Rhodanese-related sulfurtransferase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 14644; Mature: 14513
Theoretical pI: Translated: 4.92; Mature: 4.92
Prosite motif: PS50206 RHODANESE_3
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 3.8 %Met (Translated Protein) 5.3 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 4.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAQLKTSSAQMVAAARARIAEIDAAAAIALHDAPDVVFVDLRDVRERQRMGFIPGSFHCP CCCCCCCHHHHHHHHHHHHHHHHHHHEEEECCCCCEEEEEHHHHHHHHHCCCCCCCCCCC RGMLEFWVDPDSPYFKEIFAEEKRFIFHCASGWRSALSVALLQDMGFEAAHISDGFSGWR CCCEEEEECCCCHHHHHHHHHHHHEEEEHHHHHHHHHHHHHHHHCCCCEEECCCCHHHHH SAGGPVVEPVDES CCCCCCCCCCCCC >Mature Secondary Structure AQLKTSSAQMVAAARARIAEIDAAAAIALHDAPDVVFVDLRDVRERQRMGFIPGSFHCP CCCCCCHHHHHHHHHHHHHHHHHHHEEEECCCCCEEEEEHHHHHHHHHCCCCCCCCCCC RGMLEFWVDPDSPYFKEIFAEEKRFIFHCASGWRSALSVALLQDMGFEAAHISDGFSGWR CCCEEEEECCCCHHHHHHHHHHHHEEEEHHHHHHHHHHHHHHHHCCCCEEECCCCHHHHH SAGGPVVEPVDES CCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA