| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is tyrC [H]
Identifier: 99081940
GI number: 99081940
Start: 2205924
End: 2206856
Strand: Reverse
Name: tyrC [H]
Synonym: TM1040_2100
Alternate gene names: 99081940
Gene position: 2206856-2205924 (Counterclockwise)
Preceding gene: 99081941
Following gene: 99081939
Centisome position: 68.94
GC content: 64.84
Gene sequence:
>933_bases ATGAGCGAGATCACCGCCAAGCCCGTCTACAACCGCGTGGCGCTGATCGGTCTTGGGCTGATTGCCTCGTCGATGTTCTG GGCCATCAAACGCGCAGGCCTTGCAGGCGAAGTCACCGGCTACGCCCGCAGCGCGGAGACCCGAGACACCGCGCGTCGGA TTGGTCTGTGTGATCGGGTCTGCGACACGGCAAGCGCAGCGGTGGAGGGCGCGGACCTCGTGGTGCTCTGTGTGCCCGTG GGGGCGATGGGGGCCGTGGCCGCCGAGATTGCCCCGGCGCTGATGCCGGGAGCGACCGTTTCGGATGTGGGATCGGTCAA GCGCCATGTGATCGAGGATGTGGCACCCCATATCCCCGAAGGCGTGCATTTTGTGCCCTCCCACCCGCTTGCGGGCACCG AGCATTCCGGTCCCGAGTCGGGCTTTGCCGAGTTGTTCGATAACCGCTGGTGCCTTCTGGTGCCAGTGGACGGCAGCGCG CCAGAGGCCGTTGCGCGGCTGCGCGCACTCTGGGAAGGCATGGGCGCGCATGTGGACGAGATGGACGCCGACCACCACGA TCTGGTGCTTGCGGTGACAAGCCACACGCCGCATCTCATCGCCTACACGATGGTAGGGGTGGCGGATGACCTGCGCCGCG TCACCGACAGCGAAGTGATCAAATACTCGGCTGCGGGGTTTCGGGACTTCACCCGGATTGCGGCCTCGGACCCGACCATG TGGCGTGATGTGTTCCTGACCAACAAGGATGCCACGCTCGAAATTCTTGGCCGCTTCACCGAAGAGCTTTTTGCGCTGCA ACGCGCGATCCGGACCGGGGATGGTCAGCATCTGCATGACTATTTCACGCGCACCCGCTCGATCCGGCGCGGCATTATCG AAGCGGGTCAGGACACCGCGGCACCCGACTTCGGTCGCGGGGCGAAAAAGTGA
Upstream 100 bases:
>100_bases GCTACAACCTGCCCACCGCGCTGCGGATCACCATCGGGGATGAGACCGCCTGTCGTGCGGTGGCCGCAGCGGTGAAGGAC TTTAAGGCCGGGGCGGCAGA
Downstream 100 bases:
>100_bases TCGCGTGGGCGCGGCATACGCTGGCCGGGCTGGCCCTGGCCTGTGTCGCGTTCACGGGTATGCCTGTTGTGGCTGCCCCG GAAACGACGCTGCGTCCCCC
Product: cyclohexadienyl dehydrogenase
Products: NA
Alternate protein names: Arogenate dehydrogenase; ADH; Cyclohexadienyl dehydrogenase; Prephenate dehydrogenase; PDH [H]
Number of amino acids: Translated: 310; Mature: 309
Protein sequence:
>310_residues MSEITAKPVYNRVALIGLGLIASSMFWAIKRAGLAGEVTGYARSAETRDTARRIGLCDRVCDTASAAVEGADLVVLCVPV GAMGAVAAEIAPALMPGATVSDVGSVKRHVIEDVAPHIPEGVHFVPSHPLAGTEHSGPESGFAELFDNRWCLLVPVDGSA PEAVARLRALWEGMGAHVDEMDADHHDLVLAVTSHTPHLIAYTMVGVADDLRRVTDSEVIKYSAAGFRDFTRIAASDPTM WRDVFLTNKDATLEILGRFTEELFALQRAIRTGDGQHLHDYFTRTRSIRRGIIEAGQDTAAPDFGRGAKK
Sequences:
>Translated_310_residues MSEITAKPVYNRVALIGLGLIASSMFWAIKRAGLAGEVTGYARSAETRDTARRIGLCDRVCDTASAAVEGADLVVLCVPV GAMGAVAAEIAPALMPGATVSDVGSVKRHVIEDVAPHIPEGVHFVPSHPLAGTEHSGPESGFAELFDNRWCLLVPVDGSA PEAVARLRALWEGMGAHVDEMDADHHDLVLAVTSHTPHLIAYTMVGVADDLRRVTDSEVIKYSAAGFRDFTRIAASDPTM WRDVFLTNKDATLEILGRFTEELFALQRAIRTGDGQHLHDYFTRTRSIRRGIIEAGQDTAAPDFGRGAKK >Mature_309_residues SEITAKPVYNRVALIGLGLIASSMFWAIKRAGLAGEVTGYARSAETRDTARRIGLCDRVCDTASAAVEGADLVVLCVPVG AMGAVAAEIAPALMPGATVSDVGSVKRHVIEDVAPHIPEGVHFVPSHPLAGTEHSGPESGFAELFDNRWCLLVPVDGSAP EAVARLRALWEGMGAHVDEMDADHHDLVLAVTSHTPHLIAYTMVGVADDLRRVTDSEVIKYSAAGFRDFTRIAASDPTMW RDVFLTNKDATLEILGRFTEELFALQRAIRTGDGQHLHDYFTRTRSIRRGIIEAGQDTAAPDFGRGAKK
Specific function: Is competent to function as either prephenate dehydrogenase or as arogenate dehydrogenase [H]
COG id: COG0287
COG function: function code E; Prephenate dehydrogenase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 prephenate/arogenate dehydrogenase domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR008927 - InterPro: IPR016040 - InterPro: IPR003099 [H]
Pfam domain/function: PF02153 PDH [H]
EC number: =1.3.1.43; =1.3.1.12 [H]
Molecular weight: Translated: 33323; Mature: 33192
Theoretical pI: Translated: 5.92; Mature: 5.92
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSEITAKPVYNRVALIGLGLIASSMFWAIKRAGLAGEVTGYARSAETRDTARRIGLCDRV CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCHHHHHHHHHHHHHHH CDTASAAVEGADLVVLCVPVGAMGAVAAEIAPALMPGATVSDVGSVKRHVIEDVAPHIPE HHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCC GVHFVPSHPLAGTEHSGPESGFAELFDNRWCLLVPVDGSAPEAVARLRALWEGMGAHVDE CCEECCCCCCCCCCCCCCCHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCHHH MDADHHDLVLAVTSHTPHLIAYTMVGVADDLRRVTDSEVIKYSAAGFRDFTRIAASDPTM CCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCH WRDVFLTNKDATLEILGRFTEELFALQRAIRTGDGQHLHDYFTRTRSIRRGIIEAGQDTA HHHEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCC APDFGRGAKK CCCCCCCCCC >Mature Secondary Structure SEITAKPVYNRVALIGLGLIASSMFWAIKRAGLAGEVTGYARSAETRDTARRIGLCDRV CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCHHHHHHHHHHHHHHH CDTASAAVEGADLVVLCVPVGAMGAVAAEIAPALMPGATVSDVGSVKRHVIEDVAPHIPE HHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCC GVHFVPSHPLAGTEHSGPESGFAELFDNRWCLLVPVDGSAPEAVARLRALWEGMGAHVDE CCEECCCCCCCCCCCCCCCHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCHHH MDADHHDLVLAVTSHTPHLIAYTMVGVADDLRRVTDSEVIKYSAAGFRDFTRIAASDPTM CCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCH WRDVFLTNKDATLEILGRFTEELFALQRAIRTGDGQHLHDYFTRTRSIRRGIIEAGQDTA HHHEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCC APDFGRGAKK CCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 7916685 [H]