| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is hisC
Identifier: 99081941
GI number: 99081941
Start: 2206853
End: 2207941
Strand: Reverse
Name: hisC
Synonym: TM1040_2101
Alternate gene names: 99081941
Gene position: 2207941-2206853 (Counterclockwise)
Preceding gene: 99081942
Following gene: 99081940
Centisome position: 68.98
GC content: 62.44
Gene sequence:
>1089_bases ATGACCCAAATCACGCCGCAACCCGGTATCATGGACATCGCGCTTTATCAGGGGGGCGCGGCCCACGTGGACGGGGTGAG CAATGTGACCAAGCTTTCCTCAAATGAGAACCCGCTTGGGCCCAGCCCGGCCGCAGTTGAGGCTATGGCCGAAGCCGCAG CCACGATGCATCGTTACCCAAGCTCCGATCATGCCACCTTGCGCGCCGCTATCGCCGAGACTCACGGGCTTGATGCCGAG CGCATCATTTGCGGTGCCGGAAGCGACGAGATTATCGCCTTCCTGTGCCAGTGCTATGCCGGGCCCGGAGACGAGGTGCT CTATACCGAGCATGGTTTTGCCATGTATCGCATCTCGGCGCTGGCCGCCGGGGCGACCCCGGTGGAGGTCAAGGAACGCG AGCGTGTAACCGATGTGGATGCGCTCCTTGCGGGCTGCACGGCGCAGACCAAGCTGGTGTTTATCGCCAATCCCAACAAC CCCACCGGCACGATGATCTCTGAGGCAGAGGTTGCCCGCCTCGCTGACGGTATCCCGGAGGATGCGATCCTCGTTCTGGA CGGCGCTTATGCTGAATATGTCGAGGGGTTTGACGCAGGTGCTCAGCTGATCGCCGCGCGCCACAACGTCGTGATGACCC GGACCTTTTCCAAGATCTACGGTCTTGGCGGTGCGCGGGTGGGATGGGCCTATGGCCCACAGGAAATCATCGATGTCCTG AACCGTGTGCGCGGGCCGTTCAATGTTTCGACAACGGCGCTTGCAGGCGCTGAGGCTGCCGTGCGTGACACTGACTATGT GCAGCGCTGTCGCCTTGAGAATGCCAAATGGCGAGGCTGGCTGGCGGATCAGCTGGCAGAACTCGGGGTGCCCTCGGATA CCTCCTGCACCAATTTCATTCTGGCGCGGTTTGCCTCGCAATCCGAGGCCGAGTCCTGTGATGATTTCCTCAAGCAGCGC GGGCTGATCGTGCGTCGGGTCGCGGGCTACAACCTGCCCACCGCGCTGCGGATCACCATCGGGGATGAGACCGCCTGTCG TGCGGTGGCCGCAGCGGTGAAGGACTTTAAGGCCGGGGCGGCAGAATGA
Upstream 100 bases:
>100_bases CGCGCTCCAAAGCGCTGATCCGGTTGCTCACGCAGTTGCGCCTTTTCCCATCGCGCTCTTGGCGTTATGAGGAACAGGTT CGCCAAGGAGCTCAGACGAT
Downstream 100 bases:
>100_bases GCGAGATCACCGCCAAGCCCGTCTACAACCGCGTGGCGCTGATCGGTCTTGGGCTGATTGCCTCGTCGATGTTCTGGGCC ATCAAACGCGCAGGCCTTGC
Product: histidinol-phosphate aminotransferase
Products: NA
Alternate protein names: Imidazole acetol-phosphate transaminase
Number of amino acids: Translated: 362; Mature: 361
Protein sequence:
>362_residues MTQITPQPGIMDIALYQGGAAHVDGVSNVTKLSSNENPLGPSPAAVEAMAEAAATMHRYPSSDHATLRAAIAETHGLDAE RIICGAGSDEIIAFLCQCYAGPGDEVLYTEHGFAMYRISALAAGATPVEVKERERVTDVDALLAGCTAQTKLVFIANPNN PTGTMISEAEVARLADGIPEDAILVLDGAYAEYVEGFDAGAQLIAARHNVVMTRTFSKIYGLGGARVGWAYGPQEIIDVL NRVRGPFNVSTTALAGAEAAVRDTDYVQRCRLENAKWRGWLADQLAELGVPSDTSCTNFILARFASQSEAESCDDFLKQR GLIVRRVAGYNLPTALRITIGDETACRAVAAAVKDFKAGAAE
Sequences:
>Translated_362_residues MTQITPQPGIMDIALYQGGAAHVDGVSNVTKLSSNENPLGPSPAAVEAMAEAAATMHRYPSSDHATLRAAIAETHGLDAE RIICGAGSDEIIAFLCQCYAGPGDEVLYTEHGFAMYRISALAAGATPVEVKERERVTDVDALLAGCTAQTKLVFIANPNN PTGTMISEAEVARLADGIPEDAILVLDGAYAEYVEGFDAGAQLIAARHNVVMTRTFSKIYGLGGARVGWAYGPQEIIDVL NRVRGPFNVSTTALAGAEAAVRDTDYVQRCRLENAKWRGWLADQLAELGVPSDTSCTNFILARFASQSEAESCDDFLKQR GLIVRRVAGYNLPTALRITIGDETACRAVAAAVKDFKAGAAE >Mature_361_residues TQITPQPGIMDIALYQGGAAHVDGVSNVTKLSSNENPLGPSPAAVEAMAEAAATMHRYPSSDHATLRAAIAETHGLDAER IICGAGSDEIIAFLCQCYAGPGDEVLYTEHGFAMYRISALAAGATPVEVKERERVTDVDALLAGCTAQTKLVFIANPNNP TGTMISEAEVARLADGIPEDAILVLDGAYAEYVEGFDAGAQLIAARHNVVMTRTFSKIYGLGGARVGWAYGPQEIIDVLN RVRGPFNVSTTALAGAEAAVRDTDYVQRCRLENAKWRGWLADQLAELGVPSDTSCTNFILARFASQSEAESCDDFLKQRG LIVRRVAGYNLPTALRITIGDETACRAVAAAVKDFKAGAAE
Specific function: Histidine biosynthesis; seventh step. [C]
COG id: COG0079
COG function: function code E; Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
Homologues:
Organism=Escherichia coli, GI1788332, Length=321, Percent_Identity=29.2834890965732, Blast_Score=105, Evalue=5e-24, Organism=Saccharomyces cerevisiae, GI6322075, Length=341, Percent_Identity=26.3929618768328, Blast_Score=103, Evalue=3e-23,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): HIS8_SILST (Q1GET3)
Other databases:
- EMBL: CP000377 - RefSeq: YP_614095.1 - ProteinModelPortal: Q1GET3 - SMR: Q1GET3 - STRING: Q1GET3 - GeneID: 4077852 - GenomeReviews: CP000377_GR - KEGG: sit:TM1040_2101 - NMPDR: fig|292414.1.peg.468 - eggNOG: COG0079 - HOGENOM: HBG646350 - OMA: NPANILC - ProtClustDB: PRK02731 - BioCyc: SSP292414:TM1040_2101-MONOMER - HAMAP: MF_01023 - InterPro: IPR004839 - InterPro: IPR005861 - InterPro: IPR015424 - InterPro: IPR015421 - InterPro: IPR015422 - Gene3D: G3DSA:3.40.640.10 - Gene3D: G3DSA:3.90.1150.10 - TIGRFAMs: TIGR01141
Pfam domain/function: PF00155 Aminotran_1_2; SSF53383 PyrdxlP-dep_Trfase_major
EC number: =2.6.1.9
Molecular weight: Translated: 38384; Mature: 38252
Theoretical pI: Translated: 4.62; Mature: 4.62
Prosite motif: PS00599 AA_TRANSFER_CLASS_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.2 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 2.2 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTQITPQPGIMDIALYQGGAAHVDGVSNVTKLSSNENPLGPSPAAVEAMAEAAATMHRYP CCCCCCCCCCEEEEEECCCCCCCCCCHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCC SSDHATLRAAIAETHGLDAERIICGAGSDEIIAFLCQCYAGPGDEVLYTEHGFAMYRISA CCCCHHHHHHHHHHHCCCHHEEEECCCCHHHHHHHHHHHCCCCCCEEEECCCCEEEEHHH LAAGATPVEVKERERVTDVDALLAGCTAQTKLVFIANPNNPTGTMISEAEVARLADGIPE HHCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCEEHHHHHHHHHCCCCC DAILVLDGAYAEYVEGFDAGAQLIAARHNVVMTRTFSKIYGLGGARVGWAYGPQEIIDVL CEEEEEECHHHHHHHHHCHHHHHHHHHCCEEEEEHHHHHHCCCCCCCCCCCCHHHHHHHH NRVRGPFNVSTTALAGAEAAVRDTDYVQRCRLENAKWRGWLADQLAELGVPSDTSCTNFI HHCCCCCCCCHHHHCCCHHHHCCHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCCHHHHH LARFASQSEAESCDDFLKQRGLIVRRVAGYNLPTALRITIGDETACRAVAAAVKDFKAGA HHHHHCCCCHHHHHHHHHHCCCEEEHHCCCCCCEEEEEEECCHHHHHHHHHHHHHHCCCC AE CC >Mature Secondary Structure TQITPQPGIMDIALYQGGAAHVDGVSNVTKLSSNENPLGPSPAAVEAMAEAAATMHRYP CCCCCCCCCEEEEEECCCCCCCCCCHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCC SSDHATLRAAIAETHGLDAERIICGAGSDEIIAFLCQCYAGPGDEVLYTEHGFAMYRISA CCCCHHHHHHHHHHHCCCHHEEEECCCCHHHHHHHHHHHCCCCCCEEEECCCCEEEEHHH LAAGATPVEVKERERVTDVDALLAGCTAQTKLVFIANPNNPTGTMISEAEVARLADGIPE HHCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCEEHHHHHHHHHCCCCC DAILVLDGAYAEYVEGFDAGAQLIAARHNVVMTRTFSKIYGLGGARVGWAYGPQEIIDVL CEEEEEECHHHHHHHHHCHHHHHHHHHCCEEEEEHHHHHHCCCCCCCCCCCCHHHHHHHH NRVRGPFNVSTTALAGAEAAVRDTDYVQRCRLENAKWRGWLADQLAELGVPSDTSCTNFI HHCCCCCCCCHHHHCCCHHHHCCHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCCHHHHH LARFASQSEAESCDDFLKQRGLIVRRVAGYNLPTALRITIGDETACRAVAAAVKDFKAGA HHHHHCCCCHHHHHHHHHHCCCEEEHHCCCCCCEEEEEEECCHHHHHHHHHHHHHHCCCC AE CC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA