Click here to switch to the map view.

The map label for this gene is yoaB [C]

Identifier: 99081905

GI number: 99081905

Start: 2169390

End: 2169740

Strand: Reverse

Name: yoaB [C]

Synonym: TM1040_2065

Alternate gene names: 99081905

Gene position: 2169740-2169390 (Counterclockwise)

Preceding gene: 99081906

Following gene: 99081904

Centisome position: 67.78

GC content: 63.82

Gene sequence:

>351_bases
ATGAGCGATATCACCTACGCCCACACCACCCAGCGCATGAGCCAGATCGTCACCCATGGCGACACCATCTACCTTGCCGG
TCAGGTCGGCACCGCGGGCGCAAGCGTCACCCAGCAGACGCAGGATTGCCTTGACAAGATCGACGCGCTGCTGGCCGAGG
CGGGCTCCTCCAAAGAGCGCATCCTGCAGGCCACCATCTGGCTCGCGGATATGAGCGATTTTGCCGAGATGAATGCCGTC
TGGGATGCCTGGGTGCCTGAGGGGCGCGCACCGGCGCGGGCCTGTGGGGAATCCAAGCTCGCCACGCCCGATTTCACCGT
GGAAATCCTGATCATCGCCGCCAAAGGCTGA

Upstream 100 bases:

>100_bases
TCTCCGACAGCCTCGGTCATAACCTCACCCGCGTGCTTGGCGGATTTACCTCTGCTGCACGCTGAGATTTCCTTTAATCC
TCAAACCATAAGAGACTACT

Downstream 100 bases:

>100_bases
TCTCAGCGCGTCATCGCGCCTTTCGATTTTACAAACACCAACCGCGCCCGCTGCCCCTGGCGGGCGTGACAGAATATCTT
TTGCCTTGAGGAGCCTGCGC

Product: endoribonuclease L-PSP

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 116; Mature: 115

Protein sequence:

>116_residues
MSDITYAHTTQRMSQIVTHGDTIYLAGQVGTAGASVTQQTQDCLDKIDALLAEAGSSKERILQATIWLADMSDFAEMNAV
WDAWVPEGRAPARACGESKLATPDFTVEILIIAAKG

Sequences:

>Translated_116_residues
MSDITYAHTTQRMSQIVTHGDTIYLAGQVGTAGASVTQQTQDCLDKIDALLAEAGSSKERILQATIWLADMSDFAEMNAV
WDAWVPEGRAPARACGESKLATPDFTVEILIIAAKG
>Mature_115_residues
SDITYAHTTQRMSQIVTHGDTIYLAGQVGTAGASVTQQTQDCLDKIDALLAEAGSSKERILQATIWLADMSDFAEMNAVW
DAWVPEGRAPARACGESKLATPDFTVEILIIAAKG

Specific function: Unknown

COG id: COG0251

COG function: function code J; Putative translation initiation inhibitor, yjgF family

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RutC family [H]

Homologues:

Organism=Escherichia coli, GI87081979, Length=103, Percent_Identity=46.6019417475728, Blast_Score=96, Evalue=7e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013813
- InterPro:   IPR006175
- InterPro:   IPR019897 [H]

Pfam domain/function: PF01042 Ribonuc_L-PSP [H]

EC number: NA

Molecular weight: Translated: 12429; Mature: 12298

Theoretical pI: Translated: 4.30; Mature: 4.30

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDITYAHTTQRMSQIVTHGDTIYLAGQVGTAGASVTQQTQDCLDKIDALLAEAGSSKER
CCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHH
ILQATIWLADMSDFAEMNAVWDAWVPEGRAPARACGESKLATPDFTVEILIIAAKG
HHHHHHHHHCHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCCCCCEEEEEEEEECC
>Mature Secondary Structure 
SDITYAHTTQRMSQIVTHGDTIYLAGQVGTAGASVTQQTQDCLDKIDALLAEAGSSKER
CCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHH
ILQATIWLADMSDFAEMNAVWDAWVPEGRAPARACGESKLATPDFTVEILIIAAKG
HHHHHHHHHCHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCCCCCEEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA