| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is 99081830
Identifier: 99081830
GI number: 99081830
Start: 2094770
End: 2096077
Strand: Reverse
Name: 99081830
Synonym: TM1040_1990
Alternate gene names: NA
Gene position: 2096077-2094770 (Counterclockwise)
Preceding gene: 99081831
Following gene: 99081827
Centisome position: 65.48
GC content: 65.52
Gene sequence:
>1308_bases ATGTCTGATCCCGTTACCCATTCAGAAATCGAGGACGTTCTGTCCTCCATCCGCCGACTGGTCCGCGAGACCGGGCGCGA GGAAACGCCGTCTGCGCAACCCAAACCTGCGTCCCGGCTGGTGCTGACGCCAGCGTTGCGGGTGCATGAGCCTGAGGCGA CCCGCGCGCCCCAAGCCTCGCAAGAGGGGCGCTCTGATACGGGATCGAATGGTGCTCAGGACAACGCGGCGACGCGGGCC GCTGCAAGCGACGCTGTTTCAGTTTTGCGCGAAAAGAGCGCCTCTGCTGAAAAAAGCCGGGTGTTGCACCGTGCCCCCGC CTACGACACAGCCCCCGCCCAAGACACCGCCTCCGAAGGTTCGCCGCACGATAGAGCAGCGGCCCCGAATGAGGCGCGCC AGAGCCATGTCGCAACGCCTGAGCCGACACCCGTAGCCGCACCCGAAGAGCCGATTGCCGAAGCGCCCTTTGTGGAGGTT GATGAGGCCGGGCTGAAGGACGTGCTTGACGAGGCACCAAACGCGCCGATCCCGCTTGATGCGGTGCGCCGCGCAGAGCC GCAGTACGCTGCGCCTCAAGAGACACTTGATGAGGCTCAGCCGGAGCACATGGGTGAGGTCGCGCCGCAGGTGAGCCCTG CGAGCCCTGCCGATACCGCAGCTGATGCGCCGATCGAAACACCTGTTGAGGCCCCTGCGGATGCGCCGTGGCGGGACCCC GGCGCGCGACTGTTTGACAGTCTAGAGACCGGTACGCCCTCGAAGCCCACTGTGGCGGAGAATGCGGATGCCGCACCCGC GCCCGCGCAGCAGGACGCTGCAGAGACCACCGCCACACCTACGGTTGCAGGCGATGAGGCCGTGACTTCCCCGGGGCAGA GCTCTCGGGTGGCGGCTGTGGTGCGCCGGATTGCAGAGCTGGAAACCGCTGGGCGCGTTGAGGCCGCCGGCACGGATGAG GGCCGCAACCGCGCGCCTGAGATCAATGAAGATGACATCGAGGCGGTGCCCCACAGCGGCCCTACCGTCGAGACGATCCA GTGGGAAGACCATCAGGACACTGCGCCTGAGCCTGCATCCTTTGCCGAGTCCGCACAGGACATGACGCAGGATTCGCTCA CCGAGGCGACCATGAACCGTCTTGCTGCCAGCGAGGAATTCATGGACGAAGAAGGCCTGCGCGAGCTGGTGACCTCTATC GTGCGTGAGGAATTGCAGGGGGCGCTCGGCGAGCGGATCACCCGCAATGTGCGCAAATTGGTGCGCCGCGAAATCCAGCG CGCTCTGTCGACACAAGAGCTGTTGTAA
Upstream 100 bases:
>100_bases CTCAAGGCTCTGAGAAAAAACTGAGATTCTGACGTTGCTGTTGTGTGATGCGGGCAAGCTGGCTACACTTGCCCGCAAGA GGTGAGCTTGGCCCATAAAT
Downstream 100 bases:
>100_bases GCGAAGTCTCACACCCCTAGCGTCGATCTGCACCTCATGATGTGCACCTGATGAGCCGGAACGGGTGATCTGGGCCCTGT GGTTTACACCGTGTGACTTA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 435; Mature: 434
Protein sequence:
>435_residues MSDPVTHSEIEDVLSSIRRLVRETGREETPSAQPKPASRLVLTPALRVHEPEATRAPQASQEGRSDTGSNGAQDNAATRA AASDAVSVLREKSASAEKSRVLHRAPAYDTAPAQDTASEGSPHDRAAAPNEARQSHVATPEPTPVAAPEEPIAEAPFVEV DEAGLKDVLDEAPNAPIPLDAVRRAEPQYAAPQETLDEAQPEHMGEVAPQVSPASPADTAADAPIETPVEAPADAPWRDP GARLFDSLETGTPSKPTVAENADAAPAPAQQDAAETTATPTVAGDEAVTSPGQSSRVAAVVRRIAELETAGRVEAAGTDE GRNRAPEINEDDIEAVPHSGPTVETIQWEDHQDTAPEPASFAESAQDMTQDSLTEATMNRLAASEEFMDEEGLRELVTSI VREELQGALGERITRNVRKLVRREIQRALSTQELL
Sequences:
>Translated_435_residues MSDPVTHSEIEDVLSSIRRLVRETGREETPSAQPKPASRLVLTPALRVHEPEATRAPQASQEGRSDTGSNGAQDNAATRA AASDAVSVLREKSASAEKSRVLHRAPAYDTAPAQDTASEGSPHDRAAAPNEARQSHVATPEPTPVAAPEEPIAEAPFVEV DEAGLKDVLDEAPNAPIPLDAVRRAEPQYAAPQETLDEAQPEHMGEVAPQVSPASPADTAADAPIETPVEAPADAPWRDP GARLFDSLETGTPSKPTVAENADAAPAPAQQDAAETTATPTVAGDEAVTSPGQSSRVAAVVRRIAELETAGRVEAAGTDE GRNRAPEINEDDIEAVPHSGPTVETIQWEDHQDTAPEPASFAESAQDMTQDSLTEATMNRLAASEEFMDEEGLRELVTSI VREELQGALGERITRNVRKLVRREIQRALSTQELL >Mature_434_residues SDPVTHSEIEDVLSSIRRLVRETGREETPSAQPKPASRLVLTPALRVHEPEATRAPQASQEGRSDTGSNGAQDNAATRAA ASDAVSVLREKSASAEKSRVLHRAPAYDTAPAQDTASEGSPHDRAAAPNEARQSHVATPEPTPVAAPEEPIAEAPFVEVD EAGLKDVLDEAPNAPIPLDAVRRAEPQYAAPQETLDEAQPEHMGEVAPQVSPASPADTAADAPIETPVEAPADAPWRDPG ARLFDSLETGTPSKPTVAENADAAPAPAQQDAAETTATPTVAGDEAVTSPGQSSRVAAVVRRIAELETAGRVEAAGTDEG RNRAPEINEDDIEAVPHSGPTVETIQWEDHQDTAPEPASFAESAQDMTQDSLTEATMNRLAASEEFMDEEGLRELVTSIV REELQGALGERITRNVRKLVRREIQRALSTQELL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 46143; Mature: 46012
Theoretical pI: Translated: 4.17; Mature: 4.17
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 1.1 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 0.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSDPVTHSEIEDVLSSIRRLVRETGREETPSAQPKPASRLVLTPALRVHEPEATRAPQAS CCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEECCHHHHCCCHHHCCCCCH QEGRSDTGSNGAQDNAATRAAASDAVSVLREKSASAEKSRVLHRAPAYDTAPAQDTASEG HCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC SPHDRAAAPNEARQSHVATPEPTPVAAPEEPIAEAPFVEVDEAGLKDVLDEAPNAPIPLD CCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCHH AVRRAEPQYAAPQETLDEAQPEHMGEVAPQVSPASPADTAADAPIETPVEAPADAPWRDP HHHHCCCCCCCCHHHHHHCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCH GARLFDSLETGTPSKPTVAENADAAPAPAQQDAAETTATPTVAGDEAVTSPGQSSRVAAV HHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCHHHCCCCCHHHHHHH VRRIAELETAGRVEAAGTDEGRNRAPEINEDDIEAVPHSGPTVETIQWEDHQDTAPEPAS HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCEEEEEECCCCCCCCCHHH FAESAQDMTQDSLTEATMNRLAASEEFMDEEGLRELVTSIVREELQGALGERITRNVRKL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VRREIQRALSTQELL HHHHHHHHHHHHHCC >Mature Secondary Structure SDPVTHSEIEDVLSSIRRLVRETGREETPSAQPKPASRLVLTPALRVHEPEATRAPQAS CCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEECCHHHHCCCHHHCCCCCH QEGRSDTGSNGAQDNAATRAAASDAVSVLREKSASAEKSRVLHRAPAYDTAPAQDTASEG HCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC SPHDRAAAPNEARQSHVATPEPTPVAAPEEPIAEAPFVEVDEAGLKDVLDEAPNAPIPLD CCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCHH AVRRAEPQYAAPQETLDEAQPEHMGEVAPQVSPASPADTAADAPIETPVEAPADAPWRDP HHHHCCCCCCCCHHHHHHCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCH GARLFDSLETGTPSKPTVAENADAAPAPAQQDAAETTATPTVAGDEAVTSPGQSSRVAAV HHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCHHHCCCCCHHHHHHH VRRIAELETAGRVEAAGTDEGRNRAPEINEDDIEAVPHSGPTVETIQWEDHQDTAPEPAS HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCEEEEEECCCCCCCCCHHH FAESAQDMTQDSLTEATMNRLAASEEFMDEEGLRELVTSIVREELQGALGERITRNVRKL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VRREIQRALSTQELL HHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA