Definition Ruegeria sp. TM1040, complete genome.
Accession NC_008044
Length 3,200,938

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The map label for this gene is 99081830

Identifier: 99081830

GI number: 99081830

Start: 2094770

End: 2096077

Strand: Reverse

Name: 99081830

Synonym: TM1040_1990

Alternate gene names: NA

Gene position: 2096077-2094770 (Counterclockwise)

Preceding gene: 99081831

Following gene: 99081827

Centisome position: 65.48

GC content: 65.52

Gene sequence:

>1308_bases
ATGTCTGATCCCGTTACCCATTCAGAAATCGAGGACGTTCTGTCCTCCATCCGCCGACTGGTCCGCGAGACCGGGCGCGA
GGAAACGCCGTCTGCGCAACCCAAACCTGCGTCCCGGCTGGTGCTGACGCCAGCGTTGCGGGTGCATGAGCCTGAGGCGA
CCCGCGCGCCCCAAGCCTCGCAAGAGGGGCGCTCTGATACGGGATCGAATGGTGCTCAGGACAACGCGGCGACGCGGGCC
GCTGCAAGCGACGCTGTTTCAGTTTTGCGCGAAAAGAGCGCCTCTGCTGAAAAAAGCCGGGTGTTGCACCGTGCCCCCGC
CTACGACACAGCCCCCGCCCAAGACACCGCCTCCGAAGGTTCGCCGCACGATAGAGCAGCGGCCCCGAATGAGGCGCGCC
AGAGCCATGTCGCAACGCCTGAGCCGACACCCGTAGCCGCACCCGAAGAGCCGATTGCCGAAGCGCCCTTTGTGGAGGTT
GATGAGGCCGGGCTGAAGGACGTGCTTGACGAGGCACCAAACGCGCCGATCCCGCTTGATGCGGTGCGCCGCGCAGAGCC
GCAGTACGCTGCGCCTCAAGAGACACTTGATGAGGCTCAGCCGGAGCACATGGGTGAGGTCGCGCCGCAGGTGAGCCCTG
CGAGCCCTGCCGATACCGCAGCTGATGCGCCGATCGAAACACCTGTTGAGGCCCCTGCGGATGCGCCGTGGCGGGACCCC
GGCGCGCGACTGTTTGACAGTCTAGAGACCGGTACGCCCTCGAAGCCCACTGTGGCGGAGAATGCGGATGCCGCACCCGC
GCCCGCGCAGCAGGACGCTGCAGAGACCACCGCCACACCTACGGTTGCAGGCGATGAGGCCGTGACTTCCCCGGGGCAGA
GCTCTCGGGTGGCGGCTGTGGTGCGCCGGATTGCAGAGCTGGAAACCGCTGGGCGCGTTGAGGCCGCCGGCACGGATGAG
GGCCGCAACCGCGCGCCTGAGATCAATGAAGATGACATCGAGGCGGTGCCCCACAGCGGCCCTACCGTCGAGACGATCCA
GTGGGAAGACCATCAGGACACTGCGCCTGAGCCTGCATCCTTTGCCGAGTCCGCACAGGACATGACGCAGGATTCGCTCA
CCGAGGCGACCATGAACCGTCTTGCTGCCAGCGAGGAATTCATGGACGAAGAAGGCCTGCGCGAGCTGGTGACCTCTATC
GTGCGTGAGGAATTGCAGGGGGCGCTCGGCGAGCGGATCACCCGCAATGTGCGCAAATTGGTGCGCCGCGAAATCCAGCG
CGCTCTGTCGACACAAGAGCTGTTGTAA

Upstream 100 bases:

>100_bases
CTCAAGGCTCTGAGAAAAAACTGAGATTCTGACGTTGCTGTTGTGTGATGCGGGCAAGCTGGCTACACTTGCCCGCAAGA
GGTGAGCTTGGCCCATAAAT

Downstream 100 bases:

>100_bases
GCGAAGTCTCACACCCCTAGCGTCGATCTGCACCTCATGATGTGCACCTGATGAGCCGGAACGGGTGATCTGGGCCCTGT
GGTTTACACCGTGTGACTTA

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 435; Mature: 434

Protein sequence:

>435_residues
MSDPVTHSEIEDVLSSIRRLVRETGREETPSAQPKPASRLVLTPALRVHEPEATRAPQASQEGRSDTGSNGAQDNAATRA
AASDAVSVLREKSASAEKSRVLHRAPAYDTAPAQDTASEGSPHDRAAAPNEARQSHVATPEPTPVAAPEEPIAEAPFVEV
DEAGLKDVLDEAPNAPIPLDAVRRAEPQYAAPQETLDEAQPEHMGEVAPQVSPASPADTAADAPIETPVEAPADAPWRDP
GARLFDSLETGTPSKPTVAENADAAPAPAQQDAAETTATPTVAGDEAVTSPGQSSRVAAVVRRIAELETAGRVEAAGTDE
GRNRAPEINEDDIEAVPHSGPTVETIQWEDHQDTAPEPASFAESAQDMTQDSLTEATMNRLAASEEFMDEEGLRELVTSI
VREELQGALGERITRNVRKLVRREIQRALSTQELL

Sequences:

>Translated_435_residues
MSDPVTHSEIEDVLSSIRRLVRETGREETPSAQPKPASRLVLTPALRVHEPEATRAPQASQEGRSDTGSNGAQDNAATRA
AASDAVSVLREKSASAEKSRVLHRAPAYDTAPAQDTASEGSPHDRAAAPNEARQSHVATPEPTPVAAPEEPIAEAPFVEV
DEAGLKDVLDEAPNAPIPLDAVRRAEPQYAAPQETLDEAQPEHMGEVAPQVSPASPADTAADAPIETPVEAPADAPWRDP
GARLFDSLETGTPSKPTVAENADAAPAPAQQDAAETTATPTVAGDEAVTSPGQSSRVAAVVRRIAELETAGRVEAAGTDE
GRNRAPEINEDDIEAVPHSGPTVETIQWEDHQDTAPEPASFAESAQDMTQDSLTEATMNRLAASEEFMDEEGLRELVTSI
VREELQGALGERITRNVRKLVRREIQRALSTQELL
>Mature_434_residues
SDPVTHSEIEDVLSSIRRLVRETGREETPSAQPKPASRLVLTPALRVHEPEATRAPQASQEGRSDTGSNGAQDNAATRAA
ASDAVSVLREKSASAEKSRVLHRAPAYDTAPAQDTASEGSPHDRAAAPNEARQSHVATPEPTPVAAPEEPIAEAPFVEVD
EAGLKDVLDEAPNAPIPLDAVRRAEPQYAAPQETLDEAQPEHMGEVAPQVSPASPADTAADAPIETPVEAPADAPWRDPG
ARLFDSLETGTPSKPTVAENADAAPAPAQQDAAETTATPTVAGDEAVTSPGQSSRVAAVVRRIAELETAGRVEAAGTDEG
RNRAPEINEDDIEAVPHSGPTVETIQWEDHQDTAPEPASFAESAQDMTQDSLTEATMNRLAASEEFMDEEGLRELVTSIV
REELQGALGERITRNVRKLVRREIQRALSTQELL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 46143; Mature: 46012

Theoretical pI: Translated: 4.17; Mature: 4.17

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
0.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDPVTHSEIEDVLSSIRRLVRETGREETPSAQPKPASRLVLTPALRVHEPEATRAPQAS
CCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEECCHHHHCCCHHHCCCCCH
QEGRSDTGSNGAQDNAATRAAASDAVSVLREKSASAEKSRVLHRAPAYDTAPAQDTASEG
HCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
SPHDRAAAPNEARQSHVATPEPTPVAAPEEPIAEAPFVEVDEAGLKDVLDEAPNAPIPLD
CCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCHH
AVRRAEPQYAAPQETLDEAQPEHMGEVAPQVSPASPADTAADAPIETPVEAPADAPWRDP
HHHHCCCCCCCCHHHHHHCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCH
GARLFDSLETGTPSKPTVAENADAAPAPAQQDAAETTATPTVAGDEAVTSPGQSSRVAAV
HHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCHHHCCCCCHHHHHHH
VRRIAELETAGRVEAAGTDEGRNRAPEINEDDIEAVPHSGPTVETIQWEDHQDTAPEPAS
HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCEEEEEECCCCCCCCCHHH
FAESAQDMTQDSLTEATMNRLAASEEFMDEEGLRELVTSIVREELQGALGERITRNVRKL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VRREIQRALSTQELL
HHHHHHHHHHHHHCC
>Mature Secondary Structure 
SDPVTHSEIEDVLSSIRRLVRETGREETPSAQPKPASRLVLTPALRVHEPEATRAPQAS
CCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEECCHHHHCCCHHHCCCCCH
QEGRSDTGSNGAQDNAATRAAASDAVSVLREKSASAEKSRVLHRAPAYDTAPAQDTASEG
HCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
SPHDRAAAPNEARQSHVATPEPTPVAAPEEPIAEAPFVEVDEAGLKDVLDEAPNAPIPLD
CCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCHH
AVRRAEPQYAAPQETLDEAQPEHMGEVAPQVSPASPADTAADAPIETPVEAPADAPWRDP
HHHHCCCCCCCCHHHHHHCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCH
GARLFDSLETGTPSKPTVAENADAAPAPAQQDAAETTATPTVAGDEAVTSPGQSSRVAAV
HHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCHHHCCCCCHHHHHHH
VRRIAELETAGRVEAAGTDEGRNRAPEINEDDIEAVPHSGPTVETIQWEDHQDTAPEPAS
HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCEEEEEECCCCCCCCCHHH
FAESAQDMTQDSLTEATMNRLAASEEFMDEEGLRELVTSIVREELQGALGERITRNVRKL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VRREIQRALSTQELL
HHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA