| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is sgaA [H]
Identifier: 99081823
GI number: 99081823
Start: 2086629
End: 2087843
Strand: Reverse
Name: sgaA [H]
Synonym: TM1040_1983
Alternate gene names: 99081823
Gene position: 2087843-2086629 (Counterclockwise)
Preceding gene: 99081827
Following gene: 99081820
Centisome position: 65.23
GC content: 64.44
Gene sequence:
>1215_bases ATGCGCGATTCCGTGAAACTCTCCTCTGGTCGGTCTTATCTGGCGATTCCCGGGCCTTCGGTGATGCCTGATCAGGTGTT GCAGGCCATGCACCGCGCCTCGCCCAATATCTACGCGGGCGAACTGGTGGAGATGACCGGTACGCTGCCCGCGGATCTGC GCCGCGTGGCGCGCACGCAGCATCATGTTGCGATCTACATCGCCAACGGTCACGGCGCCTGGGAAGCGGCGTTGTCCAAC ACTTTGCAAGAAGGCGACAAGGTCCTGGTGCCCGCATCCGGACGGTTCGCCTATGGCTGGAGCGAAATGGCCGAAGCCCT CGGGATCAACGTCGAGGTGATGGATTTTGGCCTGCAAGCGCCCTTTGATCTTGCGCGGGTGGCCGAGCGTCTGGCGGCGG ACAAGGCGTATGAGATCAAGGCGGTTTTGGGCGTTCACACGGATACCTCGACGTCGATCCGGAATGATATCAATGGGTTG CGCGCCGCCATGGATGAGGTGGGCCATCCGGCGCTGTTGATGGCGGATTGCATTGCGTCCCTGGGCTGTGACCGGTTCGA GATGGATGCCTGGGGCGTCGATGTGATGGTGACGGGCTGTCAGAAAGGGCTGATGGTACCAGCGGGGATGTCGTTTGTGT TCTTCAACGACAAGGCGGCAGAGGCCCGCGCGCGCCTGCCGCGGATCAGCCGCTACTGGGACTGGGTGCCGCGGGCCAAC CCGGAGTATTTCTACCAGTTCTTTGGCGGCACCGCCCCGACGCATCATCTCTATGGTTTGCGGGCGGCGCTGGATCTGAT CCATGCCGAAGGCATCGAGCAGATCTGGACCCGCCATGAGACTCTGGCCCGCGCGATCTGGGCCGCCTGTGACCGCTGGA GCGAAGGCGGGGCGCTGGCGATGAACGTTGCCGATCCAGCGTTGCGCTCCCACGCGGTGACCGCGCTGCGCTTGCCGTCG CCCCGCGCCACGGATCTGCGGGTCTGGCTGGAGGAAAACCTTGGCCTCACGCTCGGCATCGGTCTTGGCATGGCGCCGCC GGACAGCGCAGAGTGGCACGGGTTCTTCCGGCTGGGCCATATGGGGCACGTCAATGGCCACATGATCATGGGGCTTTTAG GAGGGATCGAGACCGGGCTTCGGGCGCTCGACATTCCGCATGGCGCAGGCGCGCTGGAGTCGGCGGCAAAGGTGCTGGCA GGCGCGCCGTCCTGA
Upstream 100 bases:
>100_bases CCTTGTCGGATGCTACGCTAGGCTGCGCGCAATTGAAAACTGTGTCGGGCCGAGATGGACCCATTAGGGACGGCCGGGGC ACTCAGCAGGACAATTCCAC
Downstream 100 bases:
>100_bases GATCGCGACAGGCGCATTCCGGACCGCATTCGGGAAAACGAGGGTTTTGATCTGGGTTTTAAAGCAGATTTGAGAGCCGG TTGGAAAACGCGGGTTAGAA
Product: aminotransferase, class V
Products: NA
Alternate protein names: SGAT [H]
Number of amino acids: Translated: 404; Mature: 404
Protein sequence:
>404_residues MRDSVKLSSGRSYLAIPGPSVMPDQVLQAMHRASPNIYAGELVEMTGTLPADLRRVARTQHHVAIYIANGHGAWEAALSN TLQEGDKVLVPASGRFAYGWSEMAEALGINVEVMDFGLQAPFDLARVAERLAADKAYEIKAVLGVHTDTSTSIRNDINGL RAAMDEVGHPALLMADCIASLGCDRFEMDAWGVDVMVTGCQKGLMVPAGMSFVFFNDKAAEARARLPRISRYWDWVPRAN PEYFYQFFGGTAPTHHLYGLRAALDLIHAEGIEQIWTRHETLARAIWAACDRWSEGGALAMNVADPALRSHAVTALRLPS PRATDLRVWLEENLGLTLGIGLGMAPPDSAEWHGFFRLGHMGHVNGHMIMGLLGGIETGLRALDIPHGAGALESAAKVLA GAPS
Sequences:
>Translated_404_residues MRDSVKLSSGRSYLAIPGPSVMPDQVLQAMHRASPNIYAGELVEMTGTLPADLRRVARTQHHVAIYIANGHGAWEAALSN TLQEGDKVLVPASGRFAYGWSEMAEALGINVEVMDFGLQAPFDLARVAERLAADKAYEIKAVLGVHTDTSTSIRNDINGL RAAMDEVGHPALLMADCIASLGCDRFEMDAWGVDVMVTGCQKGLMVPAGMSFVFFNDKAAEARARLPRISRYWDWVPRAN PEYFYQFFGGTAPTHHLYGLRAALDLIHAEGIEQIWTRHETLARAIWAACDRWSEGGALAMNVADPALRSHAVTALRLPS PRATDLRVWLEENLGLTLGIGLGMAPPDSAEWHGFFRLGHMGHVNGHMIMGLLGGIETGLRALDIPHGAGALESAAKVLA GAPS >Mature_404_residues MRDSVKLSSGRSYLAIPGPSVMPDQVLQAMHRASPNIYAGELVEMTGTLPADLRRVARTQHHVAIYIANGHGAWEAALSN TLQEGDKVLVPASGRFAYGWSEMAEALGINVEVMDFGLQAPFDLARVAERLAADKAYEIKAVLGVHTDTSTSIRNDINGL RAAMDEVGHPALLMADCIASLGCDRFEMDAWGVDVMVTGCQKGLMVPAGMSFVFFNDKAAEARARLPRISRYWDWVPRAN PEYFYQFFGGTAPTHHLYGLRAALDLIHAEGIEQIWTRHETLARAIWAACDRWSEGGALAMNVADPALRSHAVTALRLPS PRATDLRVWLEENLGLTLGIGLGMAPPDSAEWHGFFRLGHMGHVNGHMIMGLLGGIETGLRALDIPHGAGALESAAKVLA GAPS
Specific function: Unknown
COG id: COG0075
COG function: function code E; Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family [H]
Homologues:
Organism=Homo sapiens, GI4557289, Length=327, Percent_Identity=29.3577981651376, Blast_Score=114, Evalue=1e-25, Organism=Caenorhabditis elegans, GI17536281, Length=310, Percent_Identity=29.6774193548387, Blast_Score=109, Evalue=3e-24, Organism=Saccharomyces cerevisiae, GI6321079, Length=373, Percent_Identity=24.9329758713137, Blast_Score=97, Evalue=5e-21, Organism=Drosophila melanogaster, GI17530823, Length=320, Percent_Identity=27.1875, Blast_Score=96, Evalue=3e-20,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000192 - InterPro: IPR020578 - InterPro: IPR015424 - InterPro: IPR015421 - InterPro: IPR015422 [H]
Pfam domain/function: PF00266 Aminotran_5 [H]
EC number: =2.6.1.45 [H]
Molecular weight: Translated: 43694; Mature: 43694
Theoretical pI: Translated: 6.30; Mature: 6.30
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 4.2 %Met (Translated Protein) 5.2 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 4.2 %Met (Mature Protein) 5.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRDSVKLSSGRSYLAIPGPSVMPDQVLQAMHRASPNIYAGELVEMTGTLPADLRRVARTQ CCCCEEECCCCEEEECCCCCCCHHHHHHHHHHCCCCCCCCHHHHHCCCCHHHHHHHHCCC HHVAIYIANGHGAWEAALSNTLQEGDKVLVPASGRFAYGWSEMAEALGINVEVMDFGLQA CEEEEEEECCCCHHHHHHHHHHHCCCEEEEECCCCEEECHHHHHHHHCCCEEEEECCCCC PFDLARVAERLAADKAYEIKAVLGVHTDTSTSIRNDINGLRAAMDEVGHPALLMADCIAS CHHHHHHHHHHHCCCCEEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH LGCDRFEMDAWGVDVMVTGCQKGLMVPAGMSFVFFNDKAAEARARLPRISRYWDWVPRAN CCCCCEEECCCCEEEEEECCCCCEEECCCCEEEEECCCHHHHHHHCCHHHHHHCCCCCCC PEYFYQFFGGTAPTHHLYGLRAALDLIHAEGIEQIWTRHETLARAIWAACDRWSEGGALA HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEE MNVADPALRSHAVTALRLPSPRATDLRVWLEENLGLTLGIGLGMAPPDSAEWHGFFRLGH EECCCHHHHHHCEEEEECCCCCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCEEEEECC MGHVNGHMIMGLLGGIETGLRALDIPHGAGALESAAKVLAGAPS CCCCCCHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHCCCCC >Mature Secondary Structure MRDSVKLSSGRSYLAIPGPSVMPDQVLQAMHRASPNIYAGELVEMTGTLPADLRRVARTQ CCCCEEECCCCEEEECCCCCCCHHHHHHHHHHCCCCCCCCHHHHHCCCCHHHHHHHHCCC HHVAIYIANGHGAWEAALSNTLQEGDKVLVPASGRFAYGWSEMAEALGINVEVMDFGLQA CEEEEEEECCCCHHHHHHHHHHHCCCEEEEECCCCEEECHHHHHHHHCCCEEEEECCCCC PFDLARVAERLAADKAYEIKAVLGVHTDTSTSIRNDINGLRAAMDEVGHPALLMADCIAS CHHHHHHHHHHHCCCCEEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH LGCDRFEMDAWGVDVMVTGCQKGLMVPAGMSFVFFNDKAAEARARLPRISRYWDWVPRAN CCCCCEEECCCCEEEEEECCCCCEEECCCCEEEEECCCHHHHHHHCCHHHHHHCCCCCCC PEYFYQFFGGTAPTHHLYGLRAALDLIHAEGIEQIWTRHETLARAIWAACDRWSEGGALA HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEE MNVADPALRSHAVTALRLPSPRATDLRVWLEENLGLTLGIGLGMAPPDSAEWHGFFRLGH EECCCHHHHHHCEEEEECCCCCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCEEEEECC MGHVNGHMIMGLLGGIETGLRALDIPHGAGALESAAKVLAGAPS CCCCCCHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8144463 [H]