| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is pyrG [H]
Identifier: 99081813
GI number: 99081813
Start: 2077611
End: 2079254
Strand: Direct
Name: pyrG [H]
Synonym: TM1040_1973
Alternate gene names: 99081813
Gene position: 2077611-2079254 (Clockwise)
Preceding gene: 99081807
Following gene: 99081814
Centisome position: 64.91
GC content: 60.64
Gene sequence:
>1644_bases ATGGCGCGTTTCATCTTTATTACTGGCGGTGTCGTCTCTTCTCTGGGCAAGGGACTGGCCTCTGCTGCGCTGGGTGCGCT GCTGCAGGCACGGGGCTACTCCGTGCGCCTGCGCAAACTCGACCCCTATCTGAACGTCGATCCGGGCACCATGAGCCCGT TTGAACACGGCGAGGTCTTTGTGACCGACGACGGGGCAGAAACCGACCTCGATCTGGGCCACTACGAGCGCTTCACCGGC GTGCCAGCGCGTAAGACCGACTCGATCTCCTCCGGGCGGATCTACACCAACGTGCTCGAGAAAGAGCGCCGCGGCGACTA CCTCGGCAAAACGATCCAGGTGATTCCGCATGTCACCAACGAGATCAAGGACTTCATCTCCATCGGAGAGGATGAGGTCG ATTTCATGCTCTGCGAGATCGGCGGCACCGTGGGTGACATCGAGGGGCTGCCCTTCTTTGAGGCCATCCGCCAGTTCAGC CAGGACAAGCCGCGCGGTCAGTGTATCTTCATGCACCTGACGCTGCTTCCCTACATCAAGGCCTCTGGCGAGTTGAAAAC CAAACCGACCCAGCACTCCGTGAAGGAGCTGCGTTCCATCGGTCTGGCCCCCGATATTCTGGTCTGCCGCTCCGAGGGTC CGATCCCGGTGAAAGAACGCGAAAAGCTGGCGCTCTTCTGCAACGTGCGCGCCGACAGCGTGATTGCGGCGCAGGATCTG AAATCCATCTACGAAGCGCCGCTGGCCTATCACCGCGAAGGACTCGATCAGGCGGTTCTGGACGCCTTTGGCATCGCCCC TGCCCCGCGCCCGACGCTGGACACCTGGGAAGACGTGGCCGACCGCATCTACAACCCCGAGGGCGAAGTCAAAGTCGCCA TCGTCGGCAAATACACCCAGCTGGAAGACGCCTATAAATCCATCGCCGAGGCGCTCACCCATGGTGGCATGGCGAACCGG GTAAAGGTGCGTATCGAATGGGTCGATGCAGAGCTCTTCGACAAGGAAGACGCAACGCCGTATCTGCAGGGTTTTCACGC GATCCTCGTGCCCGGCGGCTTTGGCGAGCGCGGCACCGAAGGCAAGATCAAGGCGGCGCAATATGCCCGCGAGCACAAGG TGCCCTACCTCGGTATCTGCCTCGGTATGCAGATGGCCGTGATCGAAGCTGCCCGCAACGTGGCCGGCATCGAGGAAGCA GGCTCCGAAGAGTTCGACCATGAAGCGGGCAAAAAGCGTTTTGAGCCCGTTGTTTACCACCTCAAGGAATGGGTGCAGGG CAACCACAAGGTGAGCCGCAGCGCCGATGACGACAAAGGCGGCACCATGCGTCTTGGCGCCTATGATGCGGCGCTTACCG AAGGTTCCAAAGTGGCCGAGGTCTATGGCTCCAACGCGATTGAGGAGCGTCACCGCCACCGCTATGAGGTGGACATCAAG TACCGCGAGCAACTCGAAGCCTGTGGTCTGAAGTTCACTGGCATGAGCCCGGATGGCCGCCTGCCCGAGATCGTGGAATG GACCGATCATCCGTGGTTTATCGGCGTGCAGTTCCACCCGGAACTCAAGTCCAAGCCCTTTGATCCGCACCCGCTGTTCA AGGATTTTGTACGCGCGGCCAAGGACACATCCCGCTTGGTCTAA
Upstream 100 bases:
>100_bases CGCTGATCTTACCGCCGGGCAGCAAGAGATGCGGGGTCTTCCCCGGATCACGACTGAACCGATTTGGACCTGACACGATC TCACGGGGGCAGCCGAAAAC
Downstream 100 bases:
>100_bases GCCCTGCGCATATCACCCAAAAAATCAGGCGCGTCCCTCGGGGCGCGCCTGTTTCGTTAGCAATTTATCAGCCGGTTTCT CTTATGCTCCTGAGTCGAAG
Product: CTP synthetase
Products: NA
Alternate protein names: CTP synthetase; UTP--ammonia ligase [H]
Number of amino acids: Translated: 547; Mature: 546
Protein sequence:
>547_residues MARFIFITGGVVSSLGKGLASAALGALLQARGYSVRLRKLDPYLNVDPGTMSPFEHGEVFVTDDGAETDLDLGHYERFTG VPARKTDSISSGRIYTNVLEKERRGDYLGKTIQVIPHVTNEIKDFISIGEDEVDFMLCEIGGTVGDIEGLPFFEAIRQFS QDKPRGQCIFMHLTLLPYIKASGELKTKPTQHSVKELRSIGLAPDILVCRSEGPIPVKEREKLALFCNVRADSVIAAQDL KSIYEAPLAYHREGLDQAVLDAFGIAPAPRPTLDTWEDVADRIYNPEGEVKVAIVGKYTQLEDAYKSIAEALTHGGMANR VKVRIEWVDAELFDKEDATPYLQGFHAILVPGGFGERGTEGKIKAAQYAREHKVPYLGICLGMQMAVIEAARNVAGIEEA GSEEFDHEAGKKRFEPVVYHLKEWVQGNHKVSRSADDDKGGTMRLGAYDAALTEGSKVAEVYGSNAIEERHRHRYEVDIK YREQLEACGLKFTGMSPDGRLPEIVEWTDHPWFIGVQFHPELKSKPFDPHPLFKDFVRAAKDTSRLV
Sequences:
>Translated_547_residues MARFIFITGGVVSSLGKGLASAALGALLQARGYSVRLRKLDPYLNVDPGTMSPFEHGEVFVTDDGAETDLDLGHYERFTG VPARKTDSISSGRIYTNVLEKERRGDYLGKTIQVIPHVTNEIKDFISIGEDEVDFMLCEIGGTVGDIEGLPFFEAIRQFS QDKPRGQCIFMHLTLLPYIKASGELKTKPTQHSVKELRSIGLAPDILVCRSEGPIPVKEREKLALFCNVRADSVIAAQDL KSIYEAPLAYHREGLDQAVLDAFGIAPAPRPTLDTWEDVADRIYNPEGEVKVAIVGKYTQLEDAYKSIAEALTHGGMANR VKVRIEWVDAELFDKEDATPYLQGFHAILVPGGFGERGTEGKIKAAQYAREHKVPYLGICLGMQMAVIEAARNVAGIEEA GSEEFDHEAGKKRFEPVVYHLKEWVQGNHKVSRSADDDKGGTMRLGAYDAALTEGSKVAEVYGSNAIEERHRHRYEVDIK YREQLEACGLKFTGMSPDGRLPEIVEWTDHPWFIGVQFHPELKSKPFDPHPLFKDFVRAAKDTSRLV >Mature_546_residues ARFIFITGGVVSSLGKGLASAALGALLQARGYSVRLRKLDPYLNVDPGTMSPFEHGEVFVTDDGAETDLDLGHYERFTGV PARKTDSISSGRIYTNVLEKERRGDYLGKTIQVIPHVTNEIKDFISIGEDEVDFMLCEIGGTVGDIEGLPFFEAIRQFSQ DKPRGQCIFMHLTLLPYIKASGELKTKPTQHSVKELRSIGLAPDILVCRSEGPIPVKEREKLALFCNVRADSVIAAQDLK SIYEAPLAYHREGLDQAVLDAFGIAPAPRPTLDTWEDVADRIYNPEGEVKVAIVGKYTQLEDAYKSIAEALTHGGMANRV KVRIEWVDAELFDKEDATPYLQGFHAILVPGGFGERGTEGKIKAAQYAREHKVPYLGICLGMQMAVIEAARNVAGIEEAG SEEFDHEAGKKRFEPVVYHLKEWVQGNHKVSRSADDDKGGTMRLGAYDAALTEGSKVAEVYGSNAIEERHRHRYEVDIKY REQLEACGLKFTGMSPDGRLPEIVEWTDHPWFIGVQFHPELKSKPFDPHPLFKDFVRAAKDTSRLV
Specific function: Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen [H]
COG id: COG0504
COG function: function code F; CTP synthase (UTP-ammonia lyase)
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 glutamine amidotransferase type-1 domain [H]
Homologues:
Organism=Homo sapiens, GI148491070, Length=560, Percent_Identity=43.0357142857143, Blast_Score=464, Evalue=1e-131, Organism=Homo sapiens, GI28559085, Length=564, Percent_Identity=41.6666666666667, Blast_Score=453, Evalue=1e-127, Organism=Homo sapiens, GI28559083, Length=564, Percent_Identity=41.6666666666667, Blast_Score=453, Evalue=1e-127, Organism=Homo sapiens, GI221316689, Length=564, Percent_Identity=41.6666666666667, Blast_Score=453, Evalue=1e-127, Organism=Escherichia coli, GI1789142, Length=542, Percent_Identity=54.4280442804428, Blast_Score=572, Evalue=1e-164, Organism=Caenorhabditis elegans, GI25148299, Length=611, Percent_Identity=36.4975450081833, Blast_Score=407, Evalue=1e-114, Organism=Saccharomyces cerevisiae, GI6322563, Length=569, Percent_Identity=40.7732864674868, Blast_Score=429, Evalue=1e-121, Organism=Saccharomyces cerevisiae, GI6319432, Length=572, Percent_Identity=40.5594405594406, Blast_Score=422, Evalue=1e-119, Organism=Drosophila melanogaster, GI24664469, Length=562, Percent_Identity=43.2384341637011, Blast_Score=461, Evalue=1e-130, Organism=Drosophila melanogaster, GI21357815, Length=508, Percent_Identity=42.5196850393701, Blast_Score=397, Evalue=1e-111,
Paralogues:
None
Copy number: 480 Molecules/Cell In: Growth-Phase, Minimal-Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004468 - InterPro: IPR017456 - InterPro: IPR017926 - InterPro: IPR000991 [H]
Pfam domain/function: PF06418 CTP_synth_N; PF00117 GATase [H]
EC number: =6.3.4.2 [H]
Molecular weight: Translated: 60781; Mature: 60649
Theoretical pI: Translated: 5.63; Mature: 5.63
Prosite motif: PS00442 GATASE_TYPE_I
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MARFIFITGGVVSSLGKGLASAALGALLQARGYSVRLRKLDPYLNVDPGTMSPFEHGEVF CCEEEEEECHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCEEE VTDDGAETDLDLGHYERFTGVPARKTDSISSGRIYTNVLEKERRGDYLGKTIQVIPHVTN EECCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHH EIKDFISIGEDEVDFMLCEIGGTVGDIEGLPFFEAIRQFSQDKPRGQCIFMHLTLLPYIK HHHHHHHCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHCCCCCCCEEEEEEHHHHHHH ASGELKTKPTQHSVKELRSIGLAPDILVCRSEGPIPVKEREKLALFCNVRADSVIAAQDL CCCCCCCCCCHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCEEEEEECCCCCCHHHHHH KSIYEAPLAYHREGLDQAVLDAFGIAPAPRPTLDTWEDVADRIYNPEGEVKVAIVGKYTQ HHHHHHHHHHHHHCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCEEEEEEECCHH LEDAYKSIAEALTHGGMANRVKVRIEWVDAELFDKEDATPYLQGFHAILVPGGFGERGTE HHHHHHHHHHHHHHCCCCCEEEEEEEEECHHHCCCCCCCHHHCCCEEEEECCCCCCCCCC GKIKAAQYAREHKVPYLGICLGMQMAVIEAARNVAGIEEAGSEEFDHEAGKKRFEPVVYH CCHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHCCHHHCCCCHHHHHHHHHHHHHHHHH LKEWVQGNHKVSRSADDDKGGTMRLGAYDAALTEGSKVAEVYGSNAIEERHRHRYEVDIK HHHHHCCCCCCCCCCCCCCCCEEEEECHHHHHCCCCHHHHHHCCCHHHHHHCCCEEEEEH YREQLEACGLKFTGMSPDGRLPEIVEWTDHPWFIGVQFHPELKSKPFDPHPLFKDFVRAA HHHHHHHCCCEEECCCCCCCCCHHHCCCCCCEEEEEEECCHHCCCCCCCCHHHHHHHHHH KDTSRLV HHHHCCC >Mature Secondary Structure ARFIFITGGVVSSLGKGLASAALGALLQARGYSVRLRKLDPYLNVDPGTMSPFEHGEVF CEEEEEECHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCEEE VTDDGAETDLDLGHYERFTGVPARKTDSISSGRIYTNVLEKERRGDYLGKTIQVIPHVTN EECCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHH EIKDFISIGEDEVDFMLCEIGGTVGDIEGLPFFEAIRQFSQDKPRGQCIFMHLTLLPYIK HHHHHHHCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHCCCCCCCEEEEEEHHHHHHH ASGELKTKPTQHSVKELRSIGLAPDILVCRSEGPIPVKEREKLALFCNVRADSVIAAQDL CCCCCCCCCCHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCEEEEEECCCCCCHHHHHH KSIYEAPLAYHREGLDQAVLDAFGIAPAPRPTLDTWEDVADRIYNPEGEVKVAIVGKYTQ HHHHHHHHHHHHHCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCEEEEEEECCHH LEDAYKSIAEALTHGGMANRVKVRIEWVDAELFDKEDATPYLQGFHAILVPGGFGERGTE HHHHHHHHHHHHHHCCCCCEEEEEEEEECHHHCCCCCCCHHHCCCEEEEECCCCCCCCCC GKIKAAQYAREHKVPYLGICLGMQMAVIEAARNVAGIEEAGSEEFDHEAGKKRFEPVVYH CCHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHCCHHHCCCCHHHHHHHHHHHHHHHHH LKEWVQGNHKVSRSADDDKGGTMRLGAYDAALTEGSKVAEVYGSNAIEERHRHRYEVDIK HHHHHCCCCCCCCCCCCCCCCEEEEECHHHHHCCCCHHHHHHCCCHHHHHHCCCEEEEEH YREQLEACGLKFTGMSPDGRLPEIVEWTDHPWFIGVQFHPELKSKPFDPHPLFKDFVRAA HHHHHHHCCCEEECCCCCCCCCHHHCCCCCCEEEEEEECCHHCCCCCCCCHHHHHHHHHH KDTSRLV HHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA