| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is 99081807
Identifier: 99081807
GI number: 99081807
Start: 2070774
End: 2072972
Strand: Direct
Name: 99081807
Synonym: TM1040_1967
Alternate gene names: NA
Gene position: 2070774-2072972 (Clockwise)
Preceding gene: 99081805
Following gene: 99081813
Centisome position: 64.69
GC content: 65.67
Gene sequence:
>2199_bases ATGGTACAGAATAACAAAGTTTTAACCGTTTCTTATGGAACGTTTTCATGCACCCTTGAGGGGTTTGAAGACTCCTTTGA CACGATGAAAGCGATTGCCGAGTACTTTCGTGATCTGGCTGCGGATGACCGCTATTTCGGGGCCGAACCGCCTCAGCCCG ACGCCGAGATGATGGCCCGGATCGCCCAGCGCGAAATCGCCCGCCAGGTTGAGGCCCGAAGTGGCGAAGGTGGCATCCAC CTGCGCGCCGCCGCACCTGCAACTGCACCCACTGCCGCGCCTGCGCCCGCTCCAGCCTCCGTCGCGCCCCCGGCACCCGC TGCGCCCGAAGAAGATCAAAGCACCGCCCCAGCCGTCGCCCGCACTGATGATCTGACGTCTGATTCGCCTCGGACCACAC CCGAGGCCGCGCCTCAGATGCAACCTGCGGTTCTAAATGAGGCCCCCGACGCGCCCGTAGCAACAGTTCCTGTTGATGTC TCAGAAGATGTCGCCGAGCCCGAGGCCGAGGACACGGTTCCTGCCGCCGACAGCATTGCCGCCAAACTGCAACGCATCCG CGCCGTGGTGGCCAAGGCACCGCATCAGGATGAAGAGTTCATCGAGGACGAACATGCCGATGCGGTTGAAACCGACGCGA GCGATCTCGCAGCAGAGACCACCGCCGAGCTCTACGAGGACCACTACGACGGGGAAGAGGACGCTGAGGACGCCGATGTG GCCTCCGATGAGGAAACCGTCAGCGATATTCTCGACCGTCTGGATCTGACCGGGACGCGCCGCAAGGCTGAAACGGATGA TCGCGCGGACACCGCGCATGGCGACACGGCAGAAGAGCCCGCTCCGTCACAGGAAGACACCGAAGCGCAAGCAGAGGCGC AACCTGCCGCCGCCGAGCGCCCTCAGCGTCCGCGCACCATTCGCGTGATGCCCAAACGCGCAACCTCCGAGACCGAAGGC CCCGCCGAGGCGCCCTCCGACACTCCCGAGACCGCCAGCACCGCTAAAGCAACGCCGAAACCCGCTCCCCCCCTCCGGTT GGGGGATGACACGGCTGTCTCGGTACCGTCTGGCGAGCAGCCCTCGAACGAACAAGCGGCGTCTGAGGCCGCGCCCAGCG AGCCTGTCCGCCCGCGCCGTCCGGTGCGTGGCCGGGTCATCCGCGTCAAGCGGGCACAGGCCGATGAGAGCTTGATTGAT GCCACCGCTGAGGACGTGACCCCGCGACAGCGCCCTGAGGCAACGCCTCCGGTCTCCACCAGCCTCTCCGAGGATGACGA GGCAGAACTGATGGCGGAACTGGCGGCTGTCGAGGCGGAACTCATGGCCTCTACCACAGATACGGATGAGGTTCCCGAGC AGGACGAGACCGACGGTGAAGATGCCTTTGACGATGGGGGCCCCGCTGTCGCGCCAGCCGCACCGGCAGCACCGCGCGCC ACCGAGCGCCCGGCGCGTGAGATCCTCACCTCTCGAGGCGGCTCGCCCGATGGCGATGTGTCGCGCCTGATGGCGGCTGC GGATGATCGCCTGAGCGATGAAGATGCGGCCTCCTCCCGGGAGACCTATAACCAGCTGCGCGCAGCGGTCGCCGCGGCCC AGGCGGACCCGGGCGACTCCGACGAGCAGCGCCGTGAAGCCCGCACACGGGCCTTCCGCGATGATCTTGCAAGCGTGGTG CGCCCATCCCGTGCGGCCTCGGCAGAACCCGGCTCTGGCCGTGGTACCGCGACCAGCCGTCCAGCGCCGCTCAAGCTGGT GGCCGAGCAACGTATTGATCCCGCACCGCAAGAGAATACGCCGACCATGGCGCCCGCCGCCGCAAGTGCACCGGTGCGCC CACGCCGGGTCTCCAGCGTGCTGGCCGCCTCCGAAGAAGAAGACGCAGCGCCCGCGACCCGTCAGCAAGACGGTGCCTTT GCGAGCTATGCCAGCGAGAAAGGCGCAGTGGAGCTGCATGAACTTCTTGAAGCCGCCGCCTCCTACATGAGCTTTGTCGA AGGCCGCGAGAGCTTCTCGCGCCCTCAGTTGATCAACAAGGTGCGCACGCTTGACGGGCAGAGCGATTTCAACCGTGAAG ACAGCCTGCGCTTTTTTGGTCAATTGCTGCGCGAAGGGAAACTGAAGAAAGCCTCCAACGGACGCTTTTCGGTCTCCTCG CAGATCGGCTTTCGCCCGGGCAATCGCGCCGCGGGCTGA
Upstream 100 bases:
>100_bases TAAACACAAAATTATACGAACAATTGCTAGGAGTCGGGCCGAATTTGACCCGAAGATGAATAGTGTGGACCTTGCGACTT TGCTGAGGACGAGCCGACGA
Downstream 100 bases:
>100_bases CACCTGCAAGCCCAAGACTGCGTGAGATTCCTAAGACGCCGTCCCCAGGGGCGGTGTTTTTGCATGTGCCCCTGAAGCTT AGAGATGAAAGCGCGACGCC
Product: putative CheA signal transduction histidine kinases
Products: NA
Alternate protein names: CheA Signal Transduction Histidine Kinase; CheA Signal Transduction Histidine Kinases
Number of amino acids: Translated: 732; Mature: 732
Protein sequence:
>732_residues MVQNNKVLTVSYGTFSCTLEGFEDSFDTMKAIAEYFRDLAADDRYFGAEPPQPDAEMMARIAQREIARQVEARSGEGGIH LRAAAPATAPTAAPAPAPASVAPPAPAAPEEDQSTAPAVARTDDLTSDSPRTTPEAAPQMQPAVLNEAPDAPVATVPVDV SEDVAEPEAEDTVPAADSIAAKLQRIRAVVAKAPHQDEEFIEDEHADAVETDASDLAAETTAELYEDHYDGEEDAEDADV ASDEETVSDILDRLDLTGTRRKAETDDRADTAHGDTAEEPAPSQEDTEAQAEAQPAAAERPQRPRTIRVMPKRATSETEG PAEAPSDTPETASTAKATPKPAPPLRLGDDTAVSVPSGEQPSNEQAASEAAPSEPVRPRRPVRGRVIRVKRAQADESLID ATAEDVTPRQRPEATPPVSTSLSEDDEAELMAELAAVEAELMASTTDTDEVPEQDETDGEDAFDDGGPAVAPAAPAAPRA TERPAREILTSRGGSPDGDVSRLMAAADDRLSDEDAASSRETYNQLRAAVAAAQADPGDSDEQRREARTRAFRDDLASVV RPSRAASAEPGSGRGTATSRPAPLKLVAEQRIDPAPQENTPTMAPAAASAPVRPRRVSSVLAASEEEDAAPATRQQDGAF ASYASEKGAVELHELLEAAASYMSFVEGRESFSRPQLINKVRTLDGQSDFNREDSLRFFGQLLREGKLKKASNGRFSVSS QIGFRPGNRAAG
Sequences:
>Translated_732_residues MVQNNKVLTVSYGTFSCTLEGFEDSFDTMKAIAEYFRDLAADDRYFGAEPPQPDAEMMARIAQREIARQVEARSGEGGIH LRAAAPATAPTAAPAPAPASVAPPAPAAPEEDQSTAPAVARTDDLTSDSPRTTPEAAPQMQPAVLNEAPDAPVATVPVDV SEDVAEPEAEDTVPAADSIAAKLQRIRAVVAKAPHQDEEFIEDEHADAVETDASDLAAETTAELYEDHYDGEEDAEDADV ASDEETVSDILDRLDLTGTRRKAETDDRADTAHGDTAEEPAPSQEDTEAQAEAQPAAAERPQRPRTIRVMPKRATSETEG PAEAPSDTPETASTAKATPKPAPPLRLGDDTAVSVPSGEQPSNEQAASEAAPSEPVRPRRPVRGRVIRVKRAQADESLID ATAEDVTPRQRPEATPPVSTSLSEDDEAELMAELAAVEAELMASTTDTDEVPEQDETDGEDAFDDGGPAVAPAAPAAPRA TERPAREILTSRGGSPDGDVSRLMAAADDRLSDEDAASSRETYNQLRAAVAAAQADPGDSDEQRREARTRAFRDDLASVV RPSRAASAEPGSGRGTATSRPAPLKLVAEQRIDPAPQENTPTMAPAAASAPVRPRRVSSVLAASEEEDAAPATRQQDGAF ASYASEKGAVELHELLEAAASYMSFVEGRESFSRPQLINKVRTLDGQSDFNREDSLRFFGQLLREGKLKKASNGRFSVSS QIGFRPGNRAAG >Mature_732_residues MVQNNKVLTVSYGTFSCTLEGFEDSFDTMKAIAEYFRDLAADDRYFGAEPPQPDAEMMARIAQREIARQVEARSGEGGIH LRAAAPATAPTAAPAPAPASVAPPAPAAPEEDQSTAPAVARTDDLTSDSPRTTPEAAPQMQPAVLNEAPDAPVATVPVDV SEDVAEPEAEDTVPAADSIAAKLQRIRAVVAKAPHQDEEFIEDEHADAVETDASDLAAETTAELYEDHYDGEEDAEDADV ASDEETVSDILDRLDLTGTRRKAETDDRADTAHGDTAEEPAPSQEDTEAQAEAQPAAAERPQRPRTIRVMPKRATSETEG PAEAPSDTPETASTAKATPKPAPPLRLGDDTAVSVPSGEQPSNEQAASEAAPSEPVRPRRPVRGRVIRVKRAQADESLID ATAEDVTPRQRPEATPPVSTSLSEDDEAELMAELAAVEAELMASTTDTDEVPEQDETDGEDAFDDGGPAVAPAAPAAPRA TERPAREILTSRGGSPDGDVSRLMAAADDRLSDEDAASSRETYNQLRAAVAAAQADPGDSDEQRREARTRAFRDDLASVV RPSRAASAEPGSGRGTATSRPAPLKLVAEQRIDPAPQENTPTMAPAAASAPVRPRRVSSVLAASEEEDAAPATRQQDGAF ASYASEKGAVELHELLEAAASYMSFVEGRESFSRPQLINKVRTLDGQSDFNREDSLRFFGQLLREGKLKKASNGRFSVSS QIGFRPGNRAAG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 77555; Mature: 77555
Theoretical pI: Translated: 4.14; Mature: 4.14
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.1 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 1.6 %Cys+Met (Translated Protein) 0.1 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVQNNKVLTVSYGTFSCTLEGFEDSFDTMKAIAEYFRDLAADDRYFGAEPPQPDAEMMAR CCCCCEEEEEECCCEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHH IAQREIARQVEARSGEGGIHLRAAAPATAPTAAPAPAPASVAPPAPAAPEEDQSTAPAVA HHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHH RTDDLTSDSPRTTPEAAPQMQPAVLNEAPDAPVATVPVDVSEDVAEPEAEDTVPAADSIA CCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCEEEECCCCHHHHCCCCCCCCCCCHHHHH AKLQRIRAVVAKAPHQDEEFIEDEHADAVETDASDLAAETTAELYEDHYDGEEDAEDADV HHHHHHHHHHHHCCCCCHHHHHHHCCCHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCC ASDEETVSDILDRLDLTGTRRKAETDDRADTAHGDTAEEPAPSQEDTEAQAEAQPAAAER CCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCHHHCC PQRPRTIRVMPKRATSETEGPAEAPSDTPETASTAKATPKPAPPLRLGDDTAVSVPSGEQ CCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCEEECCCCCC PSNEQAASEAAPSEPVRPRRPVRGRVIRVKRAQADESLIDATAEDVTPRQRPEATPPVST CCCHHHHHHCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC SLSEDDEAELMAELAAVEAELMASTTDTDEVPEQDETDGEDAFDDGGPAVAPAAPAAPRA CCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC TERPAREILTSRGGSPDGDVSRLMAAADDRLSDEDAASSRETYNQLRAAVAAAQADPGDS CHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCC DEQRREARTRAFRDDLASVVRPSRAASAEPGSGRGTATSRPAPLKLVAEQRIDPAPQENT HHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCC PTMAPAAASAPVRPRRVSSVLAASEEEDAAPATRQQDGAFASYASEKGAVELHELLEAAA CCCCCCCCCCCCCHHHHHHHHHHCCHHHCCCCCHHCCCCHHHHHCCCCHHHHHHHHHHHH SYMSFVEGRESFSRPQLINKVRTLDGQSDFNREDSLRFFGQLLREGKLKKASNGRFSVSS HHHHHHHHHHHHCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEECC QIGFRPGNRAAG CCCCCCCCCCCC >Mature Secondary Structure MVQNNKVLTVSYGTFSCTLEGFEDSFDTMKAIAEYFRDLAADDRYFGAEPPQPDAEMMAR CCCCCEEEEEECCCEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHH IAQREIARQVEARSGEGGIHLRAAAPATAPTAAPAPAPASVAPPAPAAPEEDQSTAPAVA HHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHH RTDDLTSDSPRTTPEAAPQMQPAVLNEAPDAPVATVPVDVSEDVAEPEAEDTVPAADSIA CCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCEEEECCCCHHHHCCCCCCCCCCCHHHHH AKLQRIRAVVAKAPHQDEEFIEDEHADAVETDASDLAAETTAELYEDHYDGEEDAEDADV HHHHHHHHHHHHCCCCCHHHHHHHCCCHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCC ASDEETVSDILDRLDLTGTRRKAETDDRADTAHGDTAEEPAPSQEDTEAQAEAQPAAAER CCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCHHHCC PQRPRTIRVMPKRATSETEGPAEAPSDTPETASTAKATPKPAPPLRLGDDTAVSVPSGEQ CCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCEEECCCCCC PSNEQAASEAAPSEPVRPRRPVRGRVIRVKRAQADESLIDATAEDVTPRQRPEATPPVST CCCHHHHHHCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC SLSEDDEAELMAELAAVEAELMASTTDTDEVPEQDETDGEDAFDDGGPAVAPAAPAAPRA CCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC TERPAREILTSRGGSPDGDVSRLMAAADDRLSDEDAASSRETYNQLRAAVAAAQADPGDS CHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCC DEQRREARTRAFRDDLASVVRPSRAASAEPGSGRGTATSRPAPLKLVAEQRIDPAPQENT HHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCC PTMAPAAASAPVRPRRVSSVLAASEEEDAAPATRQQDGAFASYASEKGAVELHELLEAAA CCCCCCCCCCCCCHHHHHHHHHHCCHHHCCCCCHHCCCCHHHHHCCCCHHHHHHHHHHHH SYMSFVEGRESFSRPQLINKVRTLDGQSDFNREDSLRFFGQLLREGKLKKASNGRFSVSS HHHHHHHHHHHHCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEECC QIGFRPGNRAAG CCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA