| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is sam [H]
Identifier: 99081805
GI number: 99081805
Start: 2069025
End: 2069999
Strand: Direct
Name: sam [H]
Synonym: TM1040_1965
Alternate gene names: 99081805
Gene position: 2069025-2069999 (Clockwise)
Preceding gene: 99081804
Following gene: 99081807
Centisome position: 64.64
GC content: 62.36
Gene sequence:
>975_bases ATGACGCAGACCTCAGCCACACCCGACACCACCGACCGCCCGCTTTTGGGGATTGCCCTGATGCTTGGGTTTTGCGCCCT CATTCCGCTCGGAGATGCGGTGGCAAAGCTGTTGTCGACACGAATCCCGGTGGGGCAGATCGTGTTTGTCCGCTTCGCCG CTCAGGGTGTAATCTTGGCGCCGGTGGCGCTGATGCTAGGGATCTCGCTGCGCTTGCCGCGCCGCATTCTGCCCATCGTG TTGCTGCGCACCCTGCTGCAAATGGGTGGTATCACTGCAATGTTTATGGCGCTGCGCTTCCTGCCGCTGGCGGATGCGGT GGCGATTGCCTTTGTGATGCCTTTCATCATGCTGCTTTTGGGCAAATACGTCCTCAAGGAAGAGGTCGGCCTGCGCCGTC TTCTGGCCTGCGTCGTGGGCTTTGCGGGTACGCTTCTGGTGATCCAGCCCAGCTTTGCGGCCGTCGGGCTCAACGCGCTC TGGCCCTTGGCGGTGGCGGTCATCTTTGCGGTGTTCATGATGGTCACCCGCACCATCGCGCGCGACACCGACCCGATTGC CATTCAGGCGGTCTCTGGCGGCATTGCCTCCGTGCTGATGGCCATACTCTTTGTGCTTGGGGCGCAATTCGAGGTCGCCG AGCTGGCGACCAACCTGCCCGCGCGTCCCGAGATTAACCTGCTGCTCCTGGCAGGGCTTTTTGGCACCATCGCGCATCTC CTGATGACGTGGTCGCTGCGCTATGCGCCCACAAGCACCCTCGCCTCGATGCAATATCTGGAGATCCCCGTGGCGGTCTT TGTCGGCTGGCTGTTCTTTGCGGAACTGCCCAACACGATCGCCGCCTGCGGCATCGCGCTCACGATGGCGGCGGGGCTTT ATGCCGTGATGCGCGAACGCCAGGTGAGCCGAGCTGCGCGCAAAGTCGATCCGACACCGATCAGCAAGACGGGCCTGCCT GCATCACCTGAATAA
Upstream 100 bases:
>100_bases GCGCACCGGCGCAGCCTGATCTCCCGGGGGGGACCGGCAGATGAAGTCCTGAACATATTCACCACTTGCCAAGCTCCAAG GACGCCCCTAGCGTCGCCGC
Downstream 100 bases:
>100_bases GCGCGCCGAGACAGTGGCGCGGCAGGATTGCCAACAGCCCTGGTCCGTCGACCTCGATACGGATCGACCCGGTGGCGCGG TTGGAGGTTCCGATGCGCGA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 324; Mature: 323
Protein sequence:
>324_residues MTQTSATPDTTDRPLLGIALMLGFCALIPLGDAVAKLLSTRIPVGQIVFVRFAAQGVILAPVALMLGISLRLPRRILPIV LLRTLLQMGGITAMFMALRFLPLADAVAIAFVMPFIMLLLGKYVLKEEVGLRRLLACVVGFAGTLLVIQPSFAAVGLNAL WPLAVAVIFAVFMMVTRTIARDTDPIAIQAVSGGIASVLMAILFVLGAQFEVAELATNLPARPEINLLLLAGLFGTIAHL LMTWSLRYAPTSTLASMQYLEIPVAVFVGWLFFAELPNTIAACGIALTMAAGLYAVMRERQVSRAARKVDPTPISKTGLP ASPE
Sequences:
>Translated_324_residues MTQTSATPDTTDRPLLGIALMLGFCALIPLGDAVAKLLSTRIPVGQIVFVRFAAQGVILAPVALMLGISLRLPRRILPIV LLRTLLQMGGITAMFMALRFLPLADAVAIAFVMPFIMLLLGKYVLKEEVGLRRLLACVVGFAGTLLVIQPSFAAVGLNAL WPLAVAVIFAVFMMVTRTIARDTDPIAIQAVSGGIASVLMAILFVLGAQFEVAELATNLPARPEINLLLLAGLFGTIAHL LMTWSLRYAPTSTLASMQYLEIPVAVFVGWLFFAELPNTIAACGIALTMAAGLYAVMRERQVSRAARKVDPTPISKTGLP ASPE >Mature_323_residues TQTSATPDTTDRPLLGIALMLGFCALIPLGDAVAKLLSTRIPVGQIVFVRFAAQGVILAPVALMLGISLRLPRRILPIVL LRTLLQMGGITAMFMALRFLPLADAVAIAFVMPFIMLLLGKYVLKEEVGLRRLLACVVGFAGTLLVIQPSFAAVGLNALW PLAVAVIFAVFMMVTRTIARDTDPIAIQAVSGGIASVLMAILFVLGAQFEVAELATNLPARPEINLLLLAGLFGTIAHLL MTWSLRYAPTSTLASMQYLEIPVAVFVGWLFFAELPNTIAACGIALTMAAGLYAVMRERQVSRAARKVDPTPISKTGLPA SPE
Specific function: Transports S-adenosylmethionine [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the drug/metabolite transporter (DMT) superfamily. 10 TMS drug/metabolite exporter (TC 2.A.7.3) family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000620 [H]
Pfam domain/function: PF00892 DUF6 [H]
EC number: NA
Molecular weight: Translated: 34567; Mature: 34436
Theoretical pI: Translated: 10.15; Mature: 10.15
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 4.6 %Met (Translated Protein) 5.6 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 4.3 %Met (Mature Protein) 5.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTQTSATPDTTDRPLLGIALMLGFCALIPLGDAVAKLLSTRIPVGQIVFVRFAAQGVILA CCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHCCHHHH PVALMLGISLRLPRRILPIVLLRTLLQMGGITAMFMALRFLPLADAVAIAFVMPFIMLLL HHHHHHHHHHHCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH GKYVLKEEVGLRRLLACVVGFAGTLLVIQPSFAAVGLNALWPLAVAVIFAVFMMVTRTIA HHHHHHHHHHHHHHHHHHHHHHCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RDTDPIAIQAVSGGIASVLMAILFVLGAQFEVAELATNLPARPEINLLLLAGLFGTIAHL CCCCCEEEEECCCCHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHH LMTWSLRYAPTSTLASMQYLEIPVAVFVGWLFFAELPNTIAACGIALTMAAGLYAVMRER HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH QVSRAARKVDPTPISKTGLPASPE HHHHHHHHCCCCCCCCCCCCCCCC >Mature Secondary Structure TQTSATPDTTDRPLLGIALMLGFCALIPLGDAVAKLLSTRIPVGQIVFVRFAAQGVILA CCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHCCHHHH PVALMLGISLRLPRRILPIVLLRTLLQMGGITAMFMALRFLPLADAVAIAFVMPFIMLLL HHHHHHHHHHHCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH GKYVLKEEVGLRRLLACVVGFAGTLLVIQPSFAAVGLNALWPLAVAVIFAVFMMVTRTIA HHHHHHHHHHHHHHHHHHHHHHCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RDTDPIAIQAVSGGIASVLMAILFVLGAQFEVAELATNLPARPEINLLLLAGLFGTIAHL CCCCCEEEEECCCCHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHH LMTWSLRYAPTSTLASMQYLEIPVAVFVGWLFFAELPNTIAACGIALTMAAGLYAVMRER HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH QVSRAARKVDPTPISKTGLPASPE HHHHHHHHCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: NA