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The map label for this gene is yxaF [H]

Identifier: 99081803

GI number: 99081803

Start: 2067414

End: 2067986

Strand: Reverse

Name: yxaF [H]

Synonym: TM1040_1963

Alternate gene names: 99081803

Gene position: 2067986-2067414 (Counterclockwise)

Preceding gene: 99081806

Following gene: 99081800

Centisome position: 64.61

GC content: 65.45

Gene sequence:

>573_bases
ATGAAGACGCCAGACACCCGCCTGACCTTGATCAAGACCGCCTCGAAACTCTTTCGGCGCAAGGGCTATTCCGGGGTGGG
CCTCTCCGAGATCTTGACCGCCGCGGGCCTGCCTAAAGGCTCTTTGTATCACCATTTTCCGGGCGGCAAGCCGGAGCTCG
CGGCGGCGGCAACACGTTGGGCGGGGGCGTGGATCGAGTCGCTGGTGCAGCGCTCCTTTGAGGGGGCGGAGACCTTTGAA
GAGGGCGCACAGGCAGCTTGCCGAGATCTGGCGGCGACGCTGGTGCAGGTCGATCACATCGAGGCCTGCCCGGTGCTGAG
CGTGTTGCAAGCGGCGTCTGACACGCCAGTCTTGCAAGAGGCGGTGCAGGAGGTCTATGCGCGCTGGACCGCAGAGCTGG
CGCGCGAAGCGCGCAGGCTCGGACGGGCGCAGCCCGACGCGGTTGCGCAATCGCTGCATATCCGCCTGCAAGGCGCCTGG
GTCATGGCCTATGCCCAACAGTCACAGGCGCCGTTTCTGCATTTGGCAGATGAAATCGCGGCAGAGGCAGCGCGCAACCC
CGCAGAGCCATGA

Upstream 100 bases:

>100_bases
CATTGGGCGCTTGGGACATGGCAGGCCTCTGAAGATGACTAGACCGGTCGGTCTAATCATAGGTGTAGACCAATCGGTCT
ACTGTGGCTATTGCTTTTTC

Downstream 100 bases:

>100_bases
TCCGGCGGTAAGCCCGCGCCACCCGCTCAGCGAATGGCGCGGGAGAGCCTGCCTCAGCAGTTGGGGACGTTGACGGCGAG
GCCCCCAAGCGAGGTTTCCT

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 190; Mature: 190

Protein sequence:

>190_residues
MKTPDTRLTLIKTASKLFRRKGYSGVGLSEILTAAGLPKGSLYHHFPGGKPELAAAATRWAGAWIESLVQRSFEGAETFE
EGAQAACRDLAATLVQVDHIEACPVLSVLQAASDTPVLQEAVQEVYARWTAELAREARRLGRAQPDAVAQSLHIRLQGAW
VMAYAQQSQAPFLHLADEIAAEAARNPAEP

Sequences:

>Translated_190_residues
MKTPDTRLTLIKTASKLFRRKGYSGVGLSEILTAAGLPKGSLYHHFPGGKPELAAAATRWAGAWIESLVQRSFEGAETFE
EGAQAACRDLAATLVQVDHIEACPVLSVLQAASDTPVLQEAVQEVYARWTAELAREARRLGRAQPDAVAQSLHIRLQGAW
VMAYAQQSQAPFLHLADEIAAEAARNPAEP
>Mature_190_residues
MKTPDTRLTLIKTASKLFRRKGYSGVGLSEILTAAGLPKGSLYHHFPGGKPELAAAATRWAGAWIESLVQRSFEGAETFE
EGAQAACRDLAATLVQVDHIEACPVLSVLQAASDTPVLQEAVQEVYARWTAELAREARRLGRAQPDAVAQSLHIRLQGAW
VMAYAQQSQAPFLHLADEIAAEAARNPAEP

Specific function: Unknown

COG id: COG1309

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR001647 [H]

Pfam domain/function: PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 20513; Mature: 20513

Theoretical pI: Translated: 6.68; Mature: 6.68

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTPDTRLTLIKTASKLFRRKGYSGVGLSEILTAAGLPKGSLYHHFPGGKPELAAAATRW
CCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHH
AGAWIESLVQRSFEGAETFEEGAQAACRDLAATLVQVDHIEACPVLSVLQAASDTPVLQE
HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCCHHHHH
AVQEVYARWTAELAREARRLGRAQPDAVAQSLHIRLQGAWVMAYAQQSQAPFLHLADEIA
HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHEEHHHCCCCHHHHHHHHH
AEAARNPAEP
HHHHCCCCCC
>Mature Secondary Structure
MKTPDTRLTLIKTASKLFRRKGYSGVGLSEILTAAGLPKGSLYHHFPGGKPELAAAATRW
CCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHH
AGAWIESLVQRSFEGAETFEEGAQAACRDLAATLVQVDHIEACPVLSVLQAASDTPVLQE
HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCCHHHHH
AVQEVYARWTAELAREARRLGRAQPDAVAQSLHIRLQGAWVMAYAQQSQAPFLHLADEIA
HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHEEHHHCCCCHHHHHHHHH
AEAARNPAEP
HHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7584049; 9384377 [H]