| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
Click here to switch to the map view.
The map label for this gene is 99081782
Identifier: 99081782
GI number: 99081782
Start: 2044881
End: 2045789
Strand: Reverse
Name: 99081782
Synonym: TM1040_1941
Alternate gene names: NA
Gene position: 2045789-2044881 (Counterclockwise)
Preceding gene: 99081783
Following gene: 99081781
Centisome position: 63.91
GC content: 60.51
Gene sequence:
>909_bases ATGCTGAGCGAGTGGTTGATCTCTCTTGAGGGAACCGAAGCCGGGCATCAGGTTGCGCTGATCCTTGCCGTGTCCGCCGC GTTTTTACACGCAGTCTTTGGCGCGCTTCAGAAAGGGCGCCATGATCCCTGGCTGTCGCGGGGCGCAATCGACGCGTCTT ACGGGCTGATGGCCGCACCCTTTGCGCTTTTTGTGGTGCCCTGGCCCGAGCCGCATATGTGGCTGATTTTCCTCGGGGTC TGGGCGATCCATGTGGTATACAAGATCCTGCAGGCCATGGCCTATACCAAGGGGGCCTATACGGTCGTCTACCCGGTGGT GCGCGGCACCGGGCCGCTGTTTGCGGTCATTGGCGCTTATCTCCTCTTTGGGGAGACCTTCACGCTGGTGCAATGGCTTG GGGTCGGGGTGCTTCTGGCCGGGATCTTTGGTCTTGCGGTTTACAACTATATTTTTCTGGTCACCGCGCGCGAGACCTTG GGGATTGCGCTTCTGCTGGCGCTGGCAACTGGCCTGTTTGTGGCGCTTTACACGACATATGACGCCTATGGTATTCGCGC GACGGCGGATCCCTTCACCTTTTTGGCGTGGTTTTTCATGATCGACGGCATGACCATGCCGATCTACGCCTACTGGCGCT GGCGGCGCATGGGCACAGATCGTCCGACTGTTGGGCCGTTGATGCTGCGCGGGTTCTTCGGCGGGCTGGTGGCCTTTGCC TCTTTTGGGTCGATCATGCTGGCCACCCGGCTCGACAAGGTGGGCGAGGCGGCGGTGCTGCGCGAAACATCGACGGTCTT TGCCGCCCTCATCGGCTGGCTGGTTCTCAAAGAAACCGTAGGTCCGCGCCGCATTGCGTTGATGGCGTTGATCGCTGCAG GTGCGGTGATTGTTGAAATGGGGGGCTGA
Upstream 100 bases:
>100_bases GAATTCGCGGCCGCGCTTACCGGTCTGGAAGAGGGCGCGTGAGGGAACCGCGATCCCGCGCCTGCGCAAGGGCGCCGCGC CTGATGGCTAGGGGCGCTGC
Downstream 100 bases:
>100_bases GGGTGCCATCTGAGAGGGATGATTTGGGACAGGAGAGGCCAGCAATGAGCGAACAGACAAGTGATCCAAGCCCGGCGGCG CGCAAGATAAGCCCCCTGGT
Product: hypothetical protein
Products: NA
Alternate protein names: Transmembrane Protein; Integral Membrane; Transporter DME Family DMT Superfamily; Transporter Permease Protein; Drug/Metabolite Transporter Superfamily Permease; Inner Membrane Protein; Drug/Metabolite Exporter Family Protein; Transporter Of DMT Superfamily; Transporter Dme Family; DMT Family Permease
Number of amino acids: Translated: 302; Mature: 302
Protein sequence:
>302_residues MLSEWLISLEGTEAGHQVALILAVSAAFLHAVFGALQKGRHDPWLSRGAIDASYGLMAAPFALFVVPWPEPHMWLIFLGV WAIHVVYKILQAMAYTKGAYTVVYPVVRGTGPLFAVIGAYLLFGETFTLVQWLGVGVLLAGIFGLAVYNYIFLVTARETL GIALLLALATGLFVALYTTYDAYGIRATADPFTFLAWFFMIDGMTMPIYAYWRWRRMGTDRPTVGPLMLRGFFGGLVAFA SFGSIMLATRLDKVGEAAVLRETSTVFAALIGWLVLKETVGPRRIALMALIAAGAVIVEMGG
Sequences:
>Translated_302_residues MLSEWLISLEGTEAGHQVALILAVSAAFLHAVFGALQKGRHDPWLSRGAIDASYGLMAAPFALFVVPWPEPHMWLIFLGV WAIHVVYKILQAMAYTKGAYTVVYPVVRGTGPLFAVIGAYLLFGETFTLVQWLGVGVLLAGIFGLAVYNYIFLVTARETL GIALLLALATGLFVALYTTYDAYGIRATADPFTFLAWFFMIDGMTMPIYAYWRWRRMGTDRPTVGPLMLRGFFGGLVAFA SFGSIMLATRLDKVGEAAVLRETSTVFAALIGWLVLKETVGPRRIALMALIAAGAVIVEMGG >Mature_302_residues MLSEWLISLEGTEAGHQVALILAVSAAFLHAVFGALQKGRHDPWLSRGAIDASYGLMAAPFALFVVPWPEPHMWLIFLGV WAIHVVYKILQAMAYTKGAYTVVYPVVRGTGPLFAVIGAYLLFGETFTLVQWLGVGVLLAGIFGLAVYNYIFLVTARETL GIALLLALATGLFVALYTTYDAYGIRATADPFTFLAWFFMIDGMTMPIYAYWRWRRMGTDRPTVGPLMLRGFFGGLVAFA SFGSIMLATRLDKVGEAAVLRETSTVFAALIGWLVLKETVGPRRIALMALIAAGAVIVEMGG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 32904; Mature: 32904
Theoretical pI: Translated: 9.09; Mature: 9.09
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 4.0 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 4.0 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLSEWLISLEGTEAGHQVALILAVSAAFLHAVFGALQKGRHDPWLSRGAIDASYGLMAAP CCCHHEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHCC FALFVVPWPEPHMWLIFLGVWAIHVVYKILQAMAYTKGAYTVVYPVVRGTGPLFAVIGAY CEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEHHHCCCHHHHHHHHH LLFGETFTLVQWLGVGVLLAGIFGLAVYNYIFLVTARETLGIALLLALATGLFVALYTTY HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECHHHHHHHHHHHHHHHHHHHHHHHH DAYGIRATADPFTFLAWFFMIDGMTMPIYAYWRWRRMGTDRPTVGPLMLRGFFGGLVAFA HCCCCEECCCHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH SFGSIMLATRLDKVGEAAVLRETSTVFAALIGWLVLKETVGPRRIALMALIAAGAVIVEM HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCEEEEEE GG CC >Mature Secondary Structure MLSEWLISLEGTEAGHQVALILAVSAAFLHAVFGALQKGRHDPWLSRGAIDASYGLMAAP CCCHHEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHCC FALFVVPWPEPHMWLIFLGVWAIHVVYKILQAMAYTKGAYTVVYPVVRGTGPLFAVIGAY CEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEHHHCCCHHHHHHHHH LLFGETFTLVQWLGVGVLLAGIFGLAVYNYIFLVTARETLGIALLLALATGLFVALYTTY HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECHHHHHHHHHHHHHHHHHHHHHHHH DAYGIRATADPFTFLAWFFMIDGMTMPIYAYWRWRRMGTDRPTVGPLMLRGFFGGLVAFA HCCCCEECCCHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH SFGSIMLATRLDKVGEAAVLRETSTVFAALIGWLVLKETVGPRRIALMALIAAGAVIVEM HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCEEEEEE GG CC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA