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The map label for this gene is ypdF [C]

Identifier: 99081762

GI number: 99081762

Start: 2022229

End: 2023398

Strand: Direct

Name: ypdF [C]

Synonym: TM1040_1921

Alternate gene names: 99081762

Gene position: 2022229-2023398 (Clockwise)

Preceding gene: 99081761

Following gene: 99081768

Centisome position: 63.18

GC content: 61.79

Gene sequence:

>1170_bases
ATGCCTGCCAACGATTTTACCACAACCGAATACGCCCGCAGACTGGAAAAGACCCGCCGCGCCATGGCCGCAAAGGGTCT
TAAAACACTGGTGATCTGCGATCCCTCGAACATGGCATGGCTCACCGGATATGACGGCTGGAGCTTCTATGTGCCTCAGG
CCGTGATTCTCCATGAGGACGGCATGCCCATGTGGTGGGGCCGCACCCAGGACAAACCCGGTGCGGCGCTTACGACCTGG
CTTGAGGCGGATCATCTCTTTGACTGGCCCGAAGAACACGTCCAGCACCCGGATCACCACCCGTTTGACTCGCTGGTGGA
TCTACTGCGGGAATTTGGCTGGACCGAGGCCATTGGCGTCGAAATGGACAACTACTATTACTCGGCGCGCAGCCACGAGA
TCCTCGAGACCGCCTTTGGTCGCGATGCTTTTGCCGATGCTACCGGCCTTGTGAACTGGCAGCGCGCCGTCAAGAGCGAG
CAGGAACTGCAGCTGATGCAAGCCGCTGGTAAGCTCTCGGCGCATATGCACGGGGTACTGCGCGCGGAATTCAACGAAGG
CATCGCCAAGAACGCGCTGGTGGCGCGGGTGCAGGCCGCAGGTATCGAAGGGCTGCCGCTTCTGGCGGGCGACTATCCGG
CAATCTCGCCGATTGCGCCCTCGGGGATCGAGGCCTCAGCCTCGCATATCACCTGGAACGACCGCCCCCTGGCCCCCGGC
GAGGCAACCTATTTCGAAATCTCGGGATGTGTGCGCCGCTATCACTGCCCGATCAGCCGCACGCTGTTCCTCGGGAGCCC
GCCCGAAGACATCCGCCGTGGTGAAAACGCGATCCTGCAGGCCATCGAGGACACCTTTGCCGTCGCCAAACCCGGTGTCA
CCTGCGAAGAGGTTGCGGCCTGCGTCTATGAGAGCTTTGGTCGCGCGGGCTACATCAAGGGCAACCGCACCGGGTATCCC
GTGGGCCTCAGCTATCCGCCGGACTGGGGCGAGCGCACCATGTCACTGCGTCCGGGTGACACTACCAAGCTTGAGGAAAA
CATGACCTTCCACCTGATGCCGGGTCTCTGGACACCCGATTGGGGCATGGCCATCACCGAGACCTTCGTGGTGACCCCCA
ATGGCGGTGAGCCTCTGGCGGATGTCCCGCGTGAAATCGTGGTGAAATAA

Upstream 100 bases:

>100_bases
GAACATTTCCATTGCTGGAACAGAGCGCACAAGACTTGATTGATGGGCTTCCCGGCGTCAACGTCATCGAGCCACAGATT
ATGAAAGACATCGAACTCTA

Downstream 100 bases:

>100_bases
TTCGTCGCTTTCACCAGTCGGTTACACTGACAGGCGGGTGATCTCCCGCCCGTCAGCGTTGTTTATAAAAAACCACACTT
CCCGTTGGGCCAAGCGCCGC

Product: peptidase M24

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 389; Mature: 388

Protein sequence:

>389_residues
MPANDFTTTEYARRLEKTRRAMAAKGLKTLVICDPSNMAWLTGYDGWSFYVPQAVILHEDGMPMWWGRTQDKPGAALTTW
LEADHLFDWPEEHVQHPDHHPFDSLVDLLREFGWTEAIGVEMDNYYYSARSHEILETAFGRDAFADATGLVNWQRAVKSE
QELQLMQAAGKLSAHMHGVLRAEFNEGIAKNALVARVQAAGIEGLPLLAGDYPAISPIAPSGIEASASHITWNDRPLAPG
EATYFEISGCVRRYHCPISRTLFLGSPPEDIRRGENAILQAIEDTFAVAKPGVTCEEVAACVYESFGRAGYIKGNRTGYP
VGLSYPPDWGERTMSLRPGDTTKLEENMTFHLMPGLWTPDWGMAITETFVVTPNGGEPLADVPREIVVK

Sequences:

>Translated_389_residues
MPANDFTTTEYARRLEKTRRAMAAKGLKTLVICDPSNMAWLTGYDGWSFYVPQAVILHEDGMPMWWGRTQDKPGAALTTW
LEADHLFDWPEEHVQHPDHHPFDSLVDLLREFGWTEAIGVEMDNYYYSARSHEILETAFGRDAFADATGLVNWQRAVKSE
QELQLMQAAGKLSAHMHGVLRAEFNEGIAKNALVARVQAAGIEGLPLLAGDYPAISPIAPSGIEASASHITWNDRPLAPG
EATYFEISGCVRRYHCPISRTLFLGSPPEDIRRGENAILQAIEDTFAVAKPGVTCEEVAACVYESFGRAGYIKGNRTGYP
VGLSYPPDWGERTMSLRPGDTTKLEENMTFHLMPGLWTPDWGMAITETFVVTPNGGEPLADVPREIVVK
>Mature_388_residues
PANDFTTTEYARRLEKTRRAMAAKGLKTLVICDPSNMAWLTGYDGWSFYVPQAVILHEDGMPMWWGRTQDKPGAALTTWL
EADHLFDWPEEHVQHPDHHPFDSLVDLLREFGWTEAIGVEMDNYYYSARSHEILETAFGRDAFADATGLVNWQRAVKSEQ
ELQLMQAAGKLSAHMHGVLRAEFNEGIAKNALVARVQAAGIEGLPLLAGDYPAISPIAPSGIEASASHITWNDRPLAPGE
ATYFEISGCVRRYHCPISRTLFLGSPPEDIRRGENAILQAIEDTFAVAKPGVTCEEVAACVYESFGRAGYIKGNRTGYPV
GLSYPPDWGERTMSLRPGDTTKLEENMTFHLMPGLWTPDWGMAITETFVVTPNGGEPLADVPREIVVK

Specific function: Unknown

COG id: COG0006

COG function: function code E; Xaa-Pro aminopeptidase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M24 family [H]

Homologues:

Organism=Escherichia coli, GI1788728, Length=179, Percent_Identity=26.8156424581006, Blast_Score=64, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000587
- InterPro:   IPR000994 [H]

Pfam domain/function: PF01321 Creatinase_N; PF00557 Peptidase_M24 [H]

EC number: 3.4.-.- [C]

Molecular weight: Translated: 43169; Mature: 43038

Theoretical pI: Translated: 4.82; Mature: 4.82

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPANDFTTTEYARRLEKTRRAMAAKGLKTLVICDPSNMAWLTGYDGWSFYVPQAVILHED
CCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCEEEEECCCCCEEECCEEEEEECC
GMPMWWGRTQDKPGAALTTWLEADHLFDWPEEHVQHPDHHPFDSLVDLLREFGWTEAIGV
CCCEECCCCCCCCCCCEEEHHHHHHCCCCCHHHCCCCCCCCHHHHHHHHHHCCCCEEECE
EMDNYYYSARSHEILETAFGRDAFADATGLVNWQRAVKSEQELQLMQAAGKLSAHMHGVL
EECCEEECCCCHHHHHHHCCCCHHHHHHCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
RAEFNEGIAKNALVARVQAAGIEGLPLLAGDYPAISPIAPSGIEASASHITWNDRPLAPG
HHHHHCCHHHHHHHHHHHHCCCCCCCEECCCCCCCCCCCCCCCCCCCCEEEECCCCCCCC
EATYFEISGCVRRYHCPISRTLFLGSPPEDIRRGENAILQAIEDTFAVAKPGVTCEEVAA
CCEEEEHHHHHHHHCCCCCEEEEECCCHHHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHH
CVYESFGRAGYIKGNRTGYPVGLSYPPDWGERTMSLRPGDTTKLEENMTFHLMPGLWTPD
HHHHHHCCCEEECCCCCCCCEECCCCCCCCCCEEEECCCCCCEECCCCEEEEECCCCCCC
WGMAITETFVVTPNGGEPLADVPREIVVK
CCCEEEEEEEEECCCCCCHHHCCHHHHCC
>Mature Secondary Structure 
PANDFTTTEYARRLEKTRRAMAAKGLKTLVICDPSNMAWLTGYDGWSFYVPQAVILHED
CCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCEEEEECCCCCEEECCEEEEEECC
GMPMWWGRTQDKPGAALTTWLEADHLFDWPEEHVQHPDHHPFDSLVDLLREFGWTEAIGV
CCCEECCCCCCCCCCCEEEHHHHHHCCCCCHHHCCCCCCCCHHHHHHHHHHCCCCEEECE
EMDNYYYSARSHEILETAFGRDAFADATGLVNWQRAVKSEQELQLMQAAGKLSAHMHGVL
EECCEEECCCCHHHHHHHCCCCHHHHHHCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
RAEFNEGIAKNALVARVQAAGIEGLPLLAGDYPAISPIAPSGIEASASHITWNDRPLAPG
HHHHHCCHHHHHHHHHHHHCCCCCCCEECCCCCCCCCCCCCCCCCCCCEEEECCCCCCCC
EATYFEISGCVRRYHCPISRTLFLGSPPEDIRRGENAILQAIEDTFAVAKPGVTCEEVAA
CCEEEEHHHHHHHHCCCCCEEEEECCCHHHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHH
CVYESFGRAGYIKGNRTGYPVGLSYPPDWGERTMSLRPGDTTKLEENMTFHLMPGLWTPD
HHHHHHCCCEEECCCCCCCCEECCCCCCCCCCEEEECCCCCCEECCCCEEEEECCCCCCC
WGMAITETFVVTPNGGEPLADVPREIVVK
CCCEEEEEEEEECCCCCCHHHCCHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]