| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is dicA [C]
Identifier: 99081750
GI number: 99081750
Start: 2011866
End: 2012237
Strand: Reverse
Name: dicA [C]
Synonym: TM1040_1909
Alternate gene names: 99081750
Gene position: 2012237-2011866 (Counterclockwise)
Preceding gene: 99081752
Following gene: 99081749
Centisome position: 62.86
GC content: 55.38
Gene sequence:
>372_bases ATGGCACATCCCGTCGACATTCACGTTGGCAAACGCATCCGGCACCGTCGCTGGCTGATCGGCATGACGCAGCAACAATT GGCTGAGAAAGTCGGAATTAAGTTTCAGCAGATCCAGAAATATGAAACCGGTGCCAACCGTGTGAGCGCGTCGCGCCTTT GGGATATTTCCGACGCACTCGATGTGAATATCAGCTTCTTTTTTGAGGGCCTGCAGGACGAGACCAAATCGGTCCCTGAC AAAGCCCGTGTCCCAGCCGATCTGATGGGCGATAAAGAAGCGCTGGATCTCGTGCGGTCCTACTATGCGATCCCGGAAAA TCAGCGTCGCCGTCTCTTTGAACTCGCTCGGGTGCTGAGCGACGTCGCCTGA
Upstream 100 bases:
>100_bases ATGTCACGCCATCGGATTGCGGGTCCGGGACAAGGGTTTTCGACGCCTTTGGGCGCGTCATCCACCCGATTTCGGAGGCC GTAGCTGGGAGATACTACAT
Downstream 100 bases:
>100_bases GCACGGGCTGGCCCAAGTCCGGGTGACCGCGATCTGCGCGGTGTTTCCTGCTTACTATACAGAGGTCGCCTTTGGGCGGC CTTTTGCTTTGCGTAACTGC
Product: XRE family transcriptional regulator
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 123; Mature: 122
Protein sequence:
>123_residues MAHPVDIHVGKRIRHRRWLIGMTQQQLAEKVGIKFQQIQKYETGANRVSASRLWDISDALDVNISFFFEGLQDETKSVPD KARVPADLMGDKEALDLVRSYYAIPENQRRRLFELARVLSDVA
Sequences:
>Translated_123_residues MAHPVDIHVGKRIRHRRWLIGMTQQQLAEKVGIKFQQIQKYETGANRVSASRLWDISDALDVNISFFFEGLQDETKSVPD KARVPADLMGDKEALDLVRSYYAIPENQRRRLFELARVLSDVA >Mature_122_residues AHPVDIHVGKRIRHRRWLIGMTQQQLAEKVGIKFQQIQKYETGANRVSASRLWDISDALDVNISFFFEGLQDETKSVPDK ARVPADLMGDKEALDLVRSYYAIPENQRRRLFELARVLSDVA
Specific function: This Protein Is A Repressor Of Division Inhibition Gene Dicb. [C]
COG id: COG1396
COG function: function code K; Predicted transcriptional regulators
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 HTH cro/C1-type DNA-binding domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001387 - InterPro: IPR010982 [H]
Pfam domain/function: PF01381 HTH_3 [H]
EC number: NA
Molecular weight: Translated: 14181; Mature: 14050
Theoretical pI: Translated: 9.57; Mature: 9.57
Prosite motif: PS50943 HTH_CROC1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAHPVDIHVGKRIRHRRWLIGMTQQQLAEKVGIKFQQIQKYETGANRVSASRLWDISDAL CCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHCCCHHH DVNISFFFEGLQDETKSVPDKARVPADLMGDKEALDLVRSYYAIPENQRRRLFELARVLS HHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHH DVA HCC >Mature Secondary Structure AHPVDIHVGKRIRHRRWLIGMTQQQLAEKVGIKFQQIQKYETGANRVSASRLWDISDAL CCCCCCHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHCCCHHH DVNISFFFEGLQDETKSVPDKARVPADLMGDKEALDLVRSYYAIPENQRRRLFELARVLS HHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHH DVA HCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: DNA [C]
Specific reaction: Protein + DNA = Protein-DNA [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8868435 [H]