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The map label for this gene is pecT [H]

Identifier: 99081752

GI number: 99081752

Start: 2013545

End: 2014462

Strand: Reverse

Name: pecT [H]

Synonym: TM1040_1911

Alternate gene names: 99081752

Gene position: 2014462-2013545 (Counterclockwise)

Preceding gene: 99081756

Following gene: 99081750

Centisome position: 62.93

GC content: 61.76

Gene sequence:

>918_bases
ATGCGGAACTTGGACATAACCACCCTGCGCTCGTTTGTGGCGGTTGCAGACACCGGCGGTGTCACCCGTGCGGCGTCATT
CCTGCACCTGACGCAATCGGCGGTTTCCATGCAGCTCAAGCGTCTTGAGGAAATGTTGGGTGTGGAGCTTCTGGACCGTT
CAGGGCGCAACATCGGCCTGACCTCGGCCGGAGAGCAGCTCTTGGGCTTTGCGCGCAAGATGCTCAGCCTCAATGACGAG
ATCATCACCCGCCTGACCGATCAGGCCTTTGAGGGCGAAGTGACACTTGGTGTGCCTCATGATGTGGTGCATCCGGTGAT
CCCGATGGTGATGCAGCGCTTTAATGTGCAGTTCCCACGGGTGAAGGTGAACCTCTGCACGTCCAATACGCGCGATCTCA
AGATGGATTTTGCCCAGGGGCGGTTTGATCTCATCGTGACCACTGAAACCACCGCAAGCGAGGGCGGCGAGGTCATTCAC
CAGATGCCGCTGCGCTGGATTGGCGCGCTTGGTGGGCAGACCTGGCGGCAGCGCCCGCTCCGGATCGGGTTCTGTCGCAA
TTGTATCTTTCGCGGACTGGCGACAGCGGCGCTTGATGATGCGGGCATCCCGTGGGAGATGGCCGTGGACAGCGAATCCG
ACCGTACCGTGGAGGCCACGGTCAGCGCCGATCTTGCAGTGGGCGTCTTGCTGGAAGGCACGCAGCCCGCGCATCAGCAG
GTGATCGACCACGGGGGCAGCCTGCCGCAGCTGCCGGTGCAACACATCAACCTCTACGGCGCTGAACGGTCAAGGGCGCA
ATATGTCGACCACCTCGCAAGCCTGATCCGTCAGGGTTTTGCCGGGCTGTCTCAGCCGGGGTTGCGCGCCGTGGGCACAG
AAATGGTCAGCGCACCCGTCCAGCTTGGGGTTGTATGA

Upstream 100 bases:

>100_bases
GTGATGGATGCGCTTGATTGCATCACTGATCTTGATATACGTTGGGCGGGCTCATTCTCAAAACGAATGATTTTGAACTA
ACCCATCAAGAGGTGTGATG

Downstream 100 bases:

>100_bases
TCACCTTGCCGGTGGCGGCGCGGCTGCGGATCAGCTCGAGCCCGGCGTCCGTCTCGCTCAGGGGGAGGCGGTGGCTGATG
TGAGGCGTGATCCGCCCCTC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: Pectinase gene transcriptional regulator [H]

Number of amino acids: Translated: 305; Mature: 305

Protein sequence:

>305_residues
MRNLDITTLRSFVAVADTGGVTRAASFLHLTQSAVSMQLKRLEEMLGVELLDRSGRNIGLTSAGEQLLGFARKMLSLNDE
IITRLTDQAFEGEVTLGVPHDVVHPVIPMVMQRFNVQFPRVKVNLCTSNTRDLKMDFAQGRFDLIVTTETTASEGGEVIH
QMPLRWIGALGGQTWRQRPLRIGFCRNCIFRGLATAALDDAGIPWEMAVDSESDRTVEATVSADLAVGVLLEGTQPAHQQ
VIDHGGSLPQLPVQHINLYGAERSRAQYVDHLASLIRQGFAGLSQPGLRAVGTEMVSAPVQLGVV

Sequences:

>Translated_305_residues
MRNLDITTLRSFVAVADTGGVTRAASFLHLTQSAVSMQLKRLEEMLGVELLDRSGRNIGLTSAGEQLLGFARKMLSLNDE
IITRLTDQAFEGEVTLGVPHDVVHPVIPMVMQRFNVQFPRVKVNLCTSNTRDLKMDFAQGRFDLIVTTETTASEGGEVIH
QMPLRWIGALGGQTWRQRPLRIGFCRNCIFRGLATAALDDAGIPWEMAVDSESDRTVEATVSADLAVGVLLEGTQPAHQQ
VIDHGGSLPQLPVQHINLYGAERSRAQYVDHLASLIRQGFAGLSQPGLRAVGTEMVSAPVQLGVV
>Mature_305_residues
MRNLDITTLRSFVAVADTGGVTRAASFLHLTQSAVSMQLKRLEEMLGVELLDRSGRNIGLTSAGEQLLGFARKMLSLNDE
IITRLTDQAFEGEVTLGVPHDVVHPVIPMVMQRFNVQFPRVKVNLCTSNTRDLKMDFAQGRFDLIVTTETTASEGGEVIH
QMPLRWIGALGGQTWRQRPLRIGFCRNCIFRGLATAALDDAGIPWEMAVDSESDRTVEATVSADLAVGVLLEGTQPAHQQ
VIDHGGSLPQLPVQHINLYGAERSRAQYVDHLASLIRQGFAGLSQPGLRAVGTEMVSAPVQLGVV

Specific function: Regulates pectinase gene expression [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788626, Length=286, Percent_Identity=30.0699300699301, Blast_Score=122, Evalue=4e-29,
Organism=Escherichia coli, GI145693105, Length=130, Percent_Identity=31.5384615384615, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1787806, Length=124, Percent_Identity=31.4516129032258, Blast_Score=74, Evalue=9e-15,
Organism=Escherichia coli, GI1787879, Length=167, Percent_Identity=31.1377245508982, Blast_Score=73, Evalue=3e-14,
Organism=Escherichia coli, GI157672245, Length=117, Percent_Identity=39.3162393162393, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1787601, Length=150, Percent_Identity=28.6666666666667, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1786713, Length=126, Percent_Identity=32.5396825396825, Blast_Score=68, Evalue=9e-13,
Organism=Escherichia coli, GI1790208, Length=145, Percent_Identity=28.9655172413793, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI48994962, Length=73, Percent_Identity=46.5753424657534, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI1790399, Length=155, Percent_Identity=27.741935483871, Blast_Score=64, Evalue=9e-12,
Organism=Escherichia coli, GI1788297, Length=155, Percent_Identity=28.3870967741935, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1788887, Length=144, Percent_Identity=33.3333333333333, Blast_Score=62, Evalue=7e-11,
Organism=Escherichia coli, GI1787589, Length=146, Percent_Identity=32.1917808219178, Blast_Score=61, Evalue=8e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33235; Mature: 33235

Theoretical pI: Translated: 6.31; Mature: 6.31

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRNLDITTLRSFVAVADTGGVTRAASFLHLTQSAVSMQLKRLEEMLGVELLDRSGRNIGL
CCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
TSAGEQLLGFARKMLSLNDEIITRLTDQAFEGEVTLGVPHDVVHPVIPMVMQRFNVQFPR
CHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCEEECCCHHHHHHHHHHHHHHHCCCCCE
VKVNLCTSNTRDLKMDFAQGRFDLIVTTETTASEGGEVIHQMPLRWIGALGGQTWRQRPL
EEEEEECCCCCCEEECCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCHHHCCCC
RIGFCRNCIFRGLATAALDDAGIPWEMAVDSESDRTVEATVSADLAVGVLLEGTQPAHQQ
CHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCEEEEEEHHHHEEEEEECCCCHHHHH
VIDHGGSLPQLPVQHINLYGAERSRAQYVDHLASLIRQGFAGLSQPGLRAVGTEMVSAPV
HHHCCCCCCCCCHHHHEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCH
QLGVV
HCCCC
>Mature Secondary Structure
MRNLDITTLRSFVAVADTGGVTRAASFLHLTQSAVSMQLKRLEEMLGVELLDRSGRNIGL
CCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
TSAGEQLLGFARKMLSLNDEIITRLTDQAFEGEVTLGVPHDVVHPVIPMVMQRFNVQFPR
CHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCEEECCCHHHHHHHHHHHHHHHCCCCCE
VKVNLCTSNTRDLKMDFAQGRFDLIVTTETTASEGGEVIHQMPLRWIGALGGQTWRQRPL
EEEEEECCCCCCEEECCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCHHHCCCC
RIGFCRNCIFRGLATAALDDAGIPWEMAVDSESDRTVEATVSADLAVGVLLEGTQPAHQQ
CHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCEEEEEEHHHHEEEEEECCCCHHHHH
VIDHGGSLPQLPVQHINLYGAERSRAQYVDHLASLIRQGFAGLSQPGLRAVGTEMVSAPV
HHHCCCCCCCCCHHHHEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCH
QLGVV
HCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8626286 [H]