| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
Click here to switch to the map view.
The map label for this gene is sam [H]
Identifier: 99081728
GI number: 99081728
Start: 1987499
End: 1988431
Strand: Reverse
Name: sam [H]
Synonym: TM1040_1887
Alternate gene names: 99081728
Gene position: 1988431-1987499 (Counterclockwise)
Preceding gene: 99081730
Following gene: 99081727
Centisome position: 62.12
GC content: 62.38
Gene sequence:
>933_bases ATGAGCGATGTATCCCAGACCAAAGCCCCGGCCACAGAGCCCACCTCCAATCCGATGCGCGGCGTGTTCTGGATGCTGGT GACGGGGCTGAACTTTGTCGCGGTCACGGCGCTCGTCAAATACATGGGCCCACGCATTCCCCCCGCCGAGAGTGCCTTTC TGCGCTATCTGCTGGGGCTGGTGTTCCTGATCCCGATGATCCGCTCGATCAAGGCGGTGGAGTGGACGTCCCAATTGCAT GGTCTCTTTGCGCTGCGCGGCGCGGTCCATGCGCTCGGTGTGATCATGTGGTTTTTTGCCATGACCCGCATCCCGCTGGC CGAGGTCACAGCGATGAATTACCTCTCGCCCGTCTATGTGACACTGGGAGCGGCGATCTTTATGGGCGAAAAACTCGCCT TTCGCCGCATTGCAGCCGTCGGGGTGGCGCTTCTTGGGGTGGTGGTGATCCTGCGCCCGGGCTTTCGCGAGGTGTCGCCG GGGCATCTGGCAATGCTCATCACTGGCTTTGCCTTCGGACTCTCATACCTCTTGGCCAAAACCATGGTCGGGCGCACCAA TCCCACCGTTGTGGTGGCGATGCTGTCGATCTGGGTGACCATCGGACTTGCGCCCTTTGCACTGGCCAACTGGGTCACGC CGACCCTCTTTGAACTGGCGCTGCTCTTTGGGGTCGCCTGTTTTGCCACCGCTGGCCACTATACGATGACGCTGGCCTTT GCCTCGGCGCCGCTGACGGTGACACAGCCGGTGACCTTCCTGCAGCTGATCTGGGCCACGCTTCTTGGCGCGCTGGCCTT TGGCGAAAGCGTCGATGTCTGGGTGGTCGTGGGCGGCACCATGATCCTTGGCGCGGTGACCTTCATCACCTGGCGCGAGG CGATGGTAAAGCGGCGCGCCATCACCCCCGCCCCGCATGCCACAAAGTCCTGA
Upstream 100 bases:
>100_bases CTGCCGGTCAGGCCGACGCACAATTGCATCCCTGAAAGGGGTACAATATTTCACAAGTGAAGGGTTGTCTTGCCGCCGCA ATAGGTGTCTTTTTGCGCGC
Downstream 100 bases:
>100_bases TCACGATATATCACCGTAATATCATGGAAAAAGCCCGTTAAGGGCCGCTGCACCTGTCGTCAGAGTGTTACACTTCTGTC ATAGATGTTTGCATCGTGAT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 310; Mature: 309
Protein sequence:
>310_residues MSDVSQTKAPATEPTSNPMRGVFWMLVTGLNFVAVTALVKYMGPRIPPAESAFLRYLLGLVFLIPMIRSIKAVEWTSQLH GLFALRGAVHALGVIMWFFAMTRIPLAEVTAMNYLSPVYVTLGAAIFMGEKLAFRRIAAVGVALLGVVVILRPGFREVSP GHLAMLITGFAFGLSYLLAKTMVGRTNPTVVVAMLSIWVTIGLAPFALANWVTPTLFELALLFGVACFATAGHYTMTLAF ASAPLTVTQPVTFLQLIWATLLGALAFGESVDVWVVVGGTMILGAVTFITWREAMVKRRAITPAPHATKS
Sequences:
>Translated_310_residues MSDVSQTKAPATEPTSNPMRGVFWMLVTGLNFVAVTALVKYMGPRIPPAESAFLRYLLGLVFLIPMIRSIKAVEWTSQLH GLFALRGAVHALGVIMWFFAMTRIPLAEVTAMNYLSPVYVTLGAAIFMGEKLAFRRIAAVGVALLGVVVILRPGFREVSP GHLAMLITGFAFGLSYLLAKTMVGRTNPTVVVAMLSIWVTIGLAPFALANWVTPTLFELALLFGVACFATAGHYTMTLAF ASAPLTVTQPVTFLQLIWATLLGALAFGESVDVWVVVGGTMILGAVTFITWREAMVKRRAITPAPHATKS >Mature_309_residues SDVSQTKAPATEPTSNPMRGVFWMLVTGLNFVAVTALVKYMGPRIPPAESAFLRYLLGLVFLIPMIRSIKAVEWTSQLHG LFALRGAVHALGVIMWFFAMTRIPLAEVTAMNYLSPVYVTLGAAIFMGEKLAFRRIAAVGVALLGVVVILRPGFREVSPG HLAMLITGFAFGLSYLLAKTMVGRTNPTVVVAMLSIWVTIGLAPFALANWVTPTLFELALLFGVACFATAGHYTMTLAFA SAPLTVTQPVTFLQLIWATLLGALAFGESVDVWVVVGGTMILGAVTFITWREAMVKRRAITPAPHATKS
Specific function: Transports S-adenosylmethionine [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the drug/metabolite transporter (DMT) superfamily. 10 TMS drug/metabolite exporter (TC 2.A.7.3) family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000620 [H]
Pfam domain/function: PF00892 DUF6 [H]
EC number: NA
Molecular weight: Translated: 33435; Mature: 33303
Theoretical pI: Translated: 10.68; Mature: 10.68
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 4.8 %Met (Translated Protein) 5.2 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 4.5 %Met (Mature Protein) 4.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSDVSQTKAPATEPTSNPMRGVFWMLVTGLNFVAVTALVKYMGPRIPPAESAFLRYLLGL CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH VFLIPMIRSIKAVEWTSQLHGLFALRGAVHALGVIMWFFAMTRIPLAEVTAMNYLSPVYV HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH TLGAAIFMGEKLAFRRIAAVGVALLGVVVILRPGFREVSPGHLAMLITGFAFGLSYLLAK HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHH TMVGRTNPTVVVAMLSIWVTIGLAPFALANWVTPTLFELALLFGVACFATAGHYTMTLAF HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCHHEEEEE ASAPLTVTQPVTFLQLIWATLLGALAFGESVDVWVVVGGTMILGAVTFITWREAMVKRRA CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHC ITPAPHATKS CCCCCCCCCC >Mature Secondary Structure SDVSQTKAPATEPTSNPMRGVFWMLVTGLNFVAVTALVKYMGPRIPPAESAFLRYLLGL CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH VFLIPMIRSIKAVEWTSQLHGLFALRGAVHALGVIMWFFAMTRIPLAEVTAMNYLSPVYV HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH TLGAAIFMGEKLAFRRIAAVGVALLGVVVILRPGFREVSPGHLAMLITGFAFGLSYLLAK HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHH TMVGRTNPTVVVAMLSIWVTIGLAPFALANWVTPTLFELALLFGVACFATAGHYTMTLAF HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCHHEEEEE ASAPLTVTQPVTFLQLIWATLLGALAFGESVDVWVVVGGTMILGAVTFITWREAMVKRRA CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHC ITPAPHATKS CCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: NA