| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is 99081727
Identifier: 99081727
GI number: 99081727
Start: 1986308
End: 1987381
Strand: Reverse
Name: 99081727
Synonym: TM1040_1886
Alternate gene names: NA
Gene position: 1987381-1986308 (Counterclockwise)
Preceding gene: 99081728
Following gene: 99081725
Centisome position: 62.09
GC content: 63.31
Gene sequence:
>1074_bases ATGTCGTTCCCGGCTGTTAGGCGCCTGTGCCTGCTGGCCGCTACGCTCGCCTTGCCGTCTGCGGGGCAGGCGGCGCTTGA CCTGTGCAACGACACCACCGCGGCGCAGCGGGTGGCAATCGGCTTTCAGGAGGCGGGCGACTGGACCTCAAAAGGCTGGT GGGATCTGCCTGCTGGCAGCTGTACAGAGGTGCTCTCTTCCGCGTCGACAAGCCGGTTTTATTATCTGCGGGTAGAGACC GAGGGCTGGGCCTTCACCGATGACAGGCTTGGGTTTTGCGTTGCTGACACGGATTTTGAAATCAAGGGCGAAGATGGGTG CGCGCGCCGTGGCTTTCGCCAGGAGAATTTCGCACGGATCGACACCAGGGGCGCCGCTGCACCCGACCCAACAGCCCAGA CGCGGCCAGCCGCAGATCCGGACACTGGGTCCGACGCCGCGCGCAGGACTTTTACACACCACCTCAGCGCCCATCTCACT CCGATCAAATCCGACGTCCCGGCGCGCCATGTGGTTCAGTCCGGGTTCAGCACCAAAGCCGTGTTTCAAGGCTGTGATGC GGAAACCACCGCCTATGCCAGCTTTTGCACCTTCATCGGCGCCGGGCGGCGCTATCTGGTTTATGACGACGGGCGCACCT CCGCCGCGCTCTGGCAGGAGATCCAGCAAGCCATCCGCGGGCGACGCTACACGCTCGAGGGTTTGCGAGAGGATCTTTTT GACACCACGTCAGAACTGGTTCTGCGCGCCATCCGACCAGAGCCCGAGGATCGCTCGGATCAGCTCTTGGCCAGCCTGCA GGGTCTCTGGCGCTCCACCATCGATCCCAATGACAGCTTTCGCGTCAGCGGGGCCGAGCGCATAAACGCCTATGCCGGGG CGGAAACATCGGTCGAATACCTCTCATTGCACAAACCCTGCGCCGAGGCGGGCGACGTGGGTCCCTTCCTTTTTACCTGG GACAACAATTCCGGCACCAGCCTGTGCTACGCCATTGCCCGCCTCACTGACACCGAACTGGCGCTGATCTACCTTCCGCG CGGGACCGAACTGGTCTACCGCCGCGAGGGCTGA
Upstream 100 bases:
>100_bases AATATCATGGAAAAAGCCCGTTAAGGGCCGCTGCACCTGTCGTCAGAGTGTTACACTTCTGTCATAGATGTTTGCATCGT GATGTACAAAATGATCCCTC
Downstream 100 bases:
>100_bases GCCCGCGGCCTTCTTCTAACCTCAAATATCCCGGGGTCCGGGGCAGCGCCCCGGCGCATGGGCTGCGCCCTGCGCTTAGG CCGCCAGCGCGCGCGAGGTG
Product: integral membrane protein-like
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 357; Mature: 356
Protein sequence:
>357_residues MSFPAVRRLCLLAATLALPSAGQAALDLCNDTTAAQRVAIGFQEAGDWTSKGWWDLPAGSCTEVLSSASTSRFYYLRVET EGWAFTDDRLGFCVADTDFEIKGEDGCARRGFRQENFARIDTRGAAAPDPTAQTRPAADPDTGSDAARRTFTHHLSAHLT PIKSDVPARHVVQSGFSTKAVFQGCDAETTAYASFCTFIGAGRRYLVYDDGRTSAALWQEIQQAIRGRRYTLEGLREDLF DTTSELVLRAIRPEPEDRSDQLLASLQGLWRSTIDPNDSFRVSGAERINAYAGAETSVEYLSLHKPCAEAGDVGPFLFTW DNNSGTSLCYAIARLTDTELALIYLPRGTELVYRREG
Sequences:
>Translated_357_residues MSFPAVRRLCLLAATLALPSAGQAALDLCNDTTAAQRVAIGFQEAGDWTSKGWWDLPAGSCTEVLSSASTSRFYYLRVET EGWAFTDDRLGFCVADTDFEIKGEDGCARRGFRQENFARIDTRGAAAPDPTAQTRPAADPDTGSDAARRTFTHHLSAHLT PIKSDVPARHVVQSGFSTKAVFQGCDAETTAYASFCTFIGAGRRYLVYDDGRTSAALWQEIQQAIRGRRYTLEGLREDLF DTTSELVLRAIRPEPEDRSDQLLASLQGLWRSTIDPNDSFRVSGAERINAYAGAETSVEYLSLHKPCAEAGDVGPFLFTW DNNSGTSLCYAIARLTDTELALIYLPRGTELVYRREG >Mature_356_residues SFPAVRRLCLLAATLALPSAGQAALDLCNDTTAAQRVAIGFQEAGDWTSKGWWDLPAGSCTEVLSSASTSRFYYLRVETE GWAFTDDRLGFCVADTDFEIKGEDGCARRGFRQENFARIDTRGAAAPDPTAQTRPAADPDTGSDAARRTFTHHLSAHLTP IKSDVPARHVVQSGFSTKAVFQGCDAETTAYASFCTFIGAGRRYLVYDDGRTSAALWQEIQQAIRGRRYTLEGLREDLFD TTSELVLRAIRPEPEDRSDQLLASLQGLWRSTIDPNDSFRVSGAERINAYAGAETSVEYLSLHKPCAEAGDVGPFLFTWD NNSGTSLCYAIARLTDTELALIYLPRGTELVYRREG
Specific function: Unknown
COG id: COG5480
COG function: function code S; Predicted integral membrane protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 39201; Mature: 39070
Theoretical pI: Translated: 4.84; Mature: 4.84
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.5 %Cys (Translated Protein) 0.3 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 2.5 %Cys (Mature Protein) 0.0 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSFPAVRRLCLLAATLALPSAGQAALDLCNDTTAAQRVAIGFQEAGDWTSKGWWDLPAGS CCCHHHHHHHHHHHHHHCCCCCHHHHHHHCCCHHHHHHHCCHHHCCCCCCCCCEECCCCH CTEVLSSASTSRFYYLRVETEGWAFTDDRLGFCVADTDFEIKGEDGCARRGFRQENFARI HHHHHHCCCCCEEEEEEEECCCCEEECCCCEEEEECCCEEEECCCCHHHCCCCCCCCEEE DTRGAAAPDPTAQTRPAADPDTGSDAARRTFTHHLSAHLTPIKSDVPARHVVQSGFSTKA CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCHHH VFQGCDAETTAYASFCTFIGAGRRYLVYDDGRTSAALWQEIQQAIRGRRYTLEGLREDLF HHCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHCCCCEEHHHHHHHHH DTTSELVLRAIRPEPEDRSDQLLASLQGLWRSTIDPNDSFRVSGAERINAYAGAETSVEY HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEECCHHHHHHHCCCCCCHHH LSLHKPCAEAGDVGPFLFTWDNNSGTSLCYAIARLTDTELALIYLPRGTELVYRREG HHHHCCHHHCCCCCCEEEEEECCCCCHHHHHHHHCCCCCEEEEEECCCCEEEEEECC >Mature Secondary Structure SFPAVRRLCLLAATLALPSAGQAALDLCNDTTAAQRVAIGFQEAGDWTSKGWWDLPAGS CCHHHHHHHHHHHHHHCCCCCHHHHHHHCCCHHHHHHHCCHHHCCCCCCCCCEECCCCH CTEVLSSASTSRFYYLRVETEGWAFTDDRLGFCVADTDFEIKGEDGCARRGFRQENFARI HHHHHHCCCCCEEEEEEEECCCCEEECCCCEEEEECCCEEEECCCCHHHCCCCCCCCEEE DTRGAAAPDPTAQTRPAADPDTGSDAARRTFTHHLSAHLTPIKSDVPARHVVQSGFSTKA CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCHHH VFQGCDAETTAYASFCTFIGAGRRYLVYDDGRTSAALWQEIQQAIRGRRYTLEGLREDLF HHCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHCCCCEEHHHHHHHHH DTTSELVLRAIRPEPEDRSDQLLASLQGLWRSTIDPNDSFRVSGAERINAYAGAETSVEY HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEECCHHHHHHHCCCCCCHHH LSLHKPCAEAGDVGPFLFTWDNNSGTSLCYAIARLTDTELALIYLPRGTELVYRREG HHHHCCHHHCCCCCCEEEEEECCCCCHHHHHHHHCCCCCEEEEEECCCCEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA