| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is 99081717
Identifier: 99081717
GI number: 99081717
Start: 1974319
End: 1974792
Strand: Reverse
Name: 99081717
Synonym: TM1040_1876
Alternate gene names: NA
Gene position: 1974792-1974319 (Counterclockwise)
Preceding gene: 99081718
Following gene: 99081716
Centisome position: 61.69
GC content: 55.91
Gene sequence:
>474_bases ATGCGTTATCTTTTCGCGTGTCTTTTGATAGCGGCGGCCTTGCCTGCCGCTGCCGCACAGCCTTCGGCAGCCTGCAAGGG GCAGCAGTCTTACGCGCTGTCGGATGGAAGCAGCTGGTGCTTGCTGCACTCTGATAAAACCACACTGACCTCGACGCTGT CGCGGGATGATGGAAACTCGAAATCGAATTCCAGTCAGGCGCATATTTTTGTGGTCGCCATGAATGGTGCTTTTTCCAAG CGCATGGGGACCAGCGAAAAGCGGATGAAAGAGATTTGTCAGGTGATGCGTTCAAAATCCCCGGACCTCTTTGCGGGCCG AACACGCGACAGAAACATCATTGTCAGCATGCTTTGGCCCGAAAAAGCAGCGGCAGAAGGTCTGTCGAACCTGGACCACC GCTTTCCCAATCAAGCGGCGGCGATGACAAAGAAATGCAGCGCGCTGCGCCATTTCGGGGTGCGCTCGCGGTAA
Upstream 100 bases:
>100_bases CGTGGCAAAAAGCTCGCGAACCCGTGGAAAAAGCACGACAATATTCCGCTCTGAGCCATTTTGCGCTAGGCAAAAGCTCT ATTCAACCAAGGAGCGATTT
Downstream 100 bases:
>100_bases TGGTGGCAGGTGCCACATATCACTGGAGGCGCGCGCCGCAGGGCCGTGCGCGCGCCTTCGCCTTGTCGGCGTCCGATCGG GGGCAGGCATGAGTGCGCGC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 157; Mature: 157
Protein sequence:
>157_residues MRYLFACLLIAAALPAAAAQPSAACKGQQSYALSDGSSWCLLHSDKTTLTSTLSRDDGNSKSNSSQAHIFVVAMNGAFSK RMGTSEKRMKEICQVMRSKSPDLFAGRTRDRNIIVSMLWPEKAAAEGLSNLDHRFPNQAAAMTKKCSALRHFGVRSR
Sequences:
>Translated_157_residues MRYLFACLLIAAALPAAAAQPSAACKGQQSYALSDGSSWCLLHSDKTTLTSTLSRDDGNSKSNSSQAHIFVVAMNGAFSK RMGTSEKRMKEICQVMRSKSPDLFAGRTRDRNIIVSMLWPEKAAAEGLSNLDHRFPNQAAAMTKKCSALRHFGVRSR >Mature_157_residues MRYLFACLLIAAALPAAAAQPSAACKGQQSYALSDGSSWCLLHSDKTTLTSTLSRDDGNSKSNSSQAHIFVVAMNGAFSK RMGTSEKRMKEICQVMRSKSPDLFAGRTRDRNIIVSMLWPEKAAAEGLSNLDHRFPNQAAAMTKKCSALRHFGVRSR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 17115; Mature: 17115
Theoretical pI: Translated: 10.53; Mature: 10.53
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.2 %Cys (Translated Protein) 4.5 %Met (Translated Protein) 7.6 %Cys+Met (Translated Protein) 3.2 %Cys (Mature Protein) 4.5 %Met (Mature Protein) 7.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRYLFACLLIAAALPAAAAQPSAACKGQQSYALSDGSSWCLLHSDKTTLTSTLSRDDGNS CHHHHHHHHHHHHHCHHCCCCCHHHCCCCCEEECCCCCEEEEECCCHHHHHHHHCCCCCC KSNSSQAHIFVVAMNGAFSKRMGTSEKRMKEICQVMRSKSPDLFAGRTRDRNIIVSMLWP CCCCCCEEEEEEEECCCHHHHCCCCHHHHHHHHHHHHCCCCCEEECCCCCCEEEEEEECC EKAAAEGLSNLDHRFPNQAAAMTKKCSALRHFGVRSR CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCC >Mature Secondary Structure MRYLFACLLIAAALPAAAAQPSAACKGQQSYALSDGSSWCLLHSDKTTLTSTLSRDDGNS CHHHHHHHHHHHHHCHHCCCCCHHHCCCCCEEECCCCCEEEEECCCHHHHHHHHCCCCCC KSNSSQAHIFVVAMNGAFSKRMGTSEKRMKEICQVMRSKSPDLFAGRTRDRNIIVSMLWP CCCCCCEEEEEEEECCCHHHHCCCCHHHHHHHHHHHHCCCCCEEECCCCCCEEEEEEECC EKAAAEGLSNLDHRFPNQAAAMTKKCSALRHFGVRSR CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA