| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is 99081707
Identifier: 99081707
GI number: 99081707
Start: 1966754
End: 1967707
Strand: Reverse
Name: 99081707
Synonym: TM1040_1866
Alternate gene names: NA
Gene position: 1967707-1966754 (Counterclockwise)
Preceding gene: 99081709
Following gene: 99081706
Centisome position: 61.47
GC content: 64.99
Gene sequence:
>954_bases ATGAAAGTCATTCTGCACATCGGTGCCCACCGCTGCGCCACCCGCAGCTTCCAGAATTACATGACCCGCAAAAGCGATAC GCTATCGCAATATGGCATCGCCTTCATGGGGCCGGAGCGCACCCGCAACGGGCTCTTGCACGGGATCCAGCCGGGCGCCA TTTCGGTCACCGGACGCGACCCGATGGCGCGCGCGCGGGGCCGGATCGCGCTGCAGCTTGCGGGTCTGCAGAACGCGGGC ACGGCCTCGGTGGTGATCTCGGATGCGTCCATGCTGCAACCGCTCGAGCAGTGTTTTGCCCTTGGCGCGCTCTATCCCGC CGCTGGCGAACATCTGGCGCGGCTCGATCATGCTTTTGACGGGGCGGTCAGCGATGTGATGCTCAATATTCGCAGCCCGG AGATGTTCTGGGCCTCTGCCTTGGCGGTGCGGCTCGAACATTCCTTGCGGATGCCCAATGCCGCCACGCTTTCGCGGATC GCAGAGGCGACGCGCAGCTGGCGCGATGTTATCCAGGACATCTATTGCGCCATGCCCGGTGCCCGCATCCGGGTGTTCCC CTACGAGGTGTTTGCCACCCAGCCCGAGGCGCAGCTCTCGGCGGTGACCGGGGTGGACTGCCCCCATGCGCGCGGGGCGT TCCGTCTCAATGCTTCTGCACGCCTGCCGGAACTGCGCGCCGAACTGCCCCCGCGGCTTGCCAAGCTTCTGCCCGAGGAC GAAGGGCGCTGGATGCCTTTCTCGGAGGCCGAGGCCGCGCGCCTGCGCGAGAGTTACTATGACGACATGATGTGGCTGGT CGGCGGTGCCGATGGCCTCGCTGAACTGGTCGAAGATCCAAACAAAGCGGACGCGACCGCAACTCCCCCTGCGCCCGATC TTGTGGTGCAGGAAGATCTGACAAGAGGACGAATGCATGACCCAGACACCGGACGATTGGCGGGCACTGGCTGA
Upstream 100 bases:
>100_bases CCCTGCGGCCACAAAAAAATCACCTTTCGTTAAGCGTGAGGGAACCCCTTTCGCGCATGGTTTTGGGCAGAGCTTCACGC CTGCGCAAGGAGAACCTGCG
Downstream 100 bases:
>100_bases AAAAGAACTGCGCGGACGCCCGCTCGAGGATCTCACCTGGCAGACCCTCGAGGGCATTGACGTCAAACCGCTTTATACGG CCGAGGACACCGCAGAGCTT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 317; Mature: 317
Protein sequence:
>317_residues MKVILHIGAHRCATRSFQNYMTRKSDTLSQYGIAFMGPERTRNGLLHGIQPGAISVTGRDPMARARGRIALQLAGLQNAG TASVVISDASMLQPLEQCFALGALYPAAGEHLARLDHAFDGAVSDVMLNIRSPEMFWASALAVRLEHSLRMPNAATLSRI AEATRSWRDVIQDIYCAMPGARIRVFPYEVFATQPEAQLSAVTGVDCPHARGAFRLNASARLPELRAELPPRLAKLLPED EGRWMPFSEAEAARLRESYYDDMMWLVGGADGLAELVEDPNKADATATPPAPDLVVQEDLTRGRMHDPDTGRLAGTG
Sequences:
>Translated_317_residues MKVILHIGAHRCATRSFQNYMTRKSDTLSQYGIAFMGPERTRNGLLHGIQPGAISVTGRDPMARARGRIALQLAGLQNAG TASVVISDASMLQPLEQCFALGALYPAAGEHLARLDHAFDGAVSDVMLNIRSPEMFWASALAVRLEHSLRMPNAATLSRI AEATRSWRDVIQDIYCAMPGARIRVFPYEVFATQPEAQLSAVTGVDCPHARGAFRLNASARLPELRAELPPRLAKLLPED EGRWMPFSEAEAARLRESYYDDMMWLVGGADGLAELVEDPNKADATATPPAPDLVVQEDLTRGRMHDPDTGRLAGTG >Mature_317_residues MKVILHIGAHRCATRSFQNYMTRKSDTLSQYGIAFMGPERTRNGLLHGIQPGAISVTGRDPMARARGRIALQLAGLQNAG TASVVISDASMLQPLEQCFALGALYPAAGEHLARLDHAFDGAVSDVMLNIRSPEMFWASALAVRLEHSLRMPNAATLSRI AEATRSWRDVIQDIYCAMPGARIRVFPYEVFATQPEAQLSAVTGVDCPHARGAFRLNASARLPELRAELPPRLAKLLPED EGRWMPFSEAEAARLRESYYDDMMWLVGGADGLAELVEDPNKADATATPPAPDLVVQEDLTRGRMHDPDTGRLAGTG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 34560; Mature: 34560
Theoretical pI: Translated: 6.51; Mature: 6.51
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 4.1 %Met (Translated Protein) 5.4 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 4.1 %Met (Mature Protein) 5.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKVILHIGAHRCATRSFQNYMTRKSDTLSQYGIAFMGPERTRNGLLHGIQPGAISVTGRD CEEEEEECCHHHHHHHHHHHHHHCHHHHHHCCEEEECCHHHHCCCCCCCCCCEEEEECCC PMARARGRIALQLAGLQNAGTASVVISDASMLQPLEQCFALGALYPAAGEHLARLDHAFD HHHHHCCCEEEEEECCCCCCCEEEEECCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH GAVSDVMLNIRSPEMFWASALAVRLEHSLRMPNAATLSRIAEATRSWRDVIQDIYCAMPG HHHHHHHEECCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC ARIRVFPYEVFATQPEAQLSAVTGVDCPHARGAFRLNASARLPELRAELPPRLAKLLPED CEEEEEEEHEECCCCCHHHHHHCCCCCCCCCCEEEECCCCCCCHHHHHCCHHHHHHCCCC EGRWMPFSEAEAARLRESYYDDMMWLVGGADGLAELVEDPNKADATATPPAPDLVVQEDL CCCCCCCCHHHHHHHHHHHHHHHHHEECCCHHHHHHHCCCCCCCCCCCCCCCCCEEHHHH TRGRMHDPDTGRLAGTG HCCCCCCCCCCCCCCCC >Mature Secondary Structure MKVILHIGAHRCATRSFQNYMTRKSDTLSQYGIAFMGPERTRNGLLHGIQPGAISVTGRD CEEEEEECCHHHHHHHHHHHHHHCHHHHHHCCEEEECCHHHHCCCCCCCCCCEEEEECCC PMARARGRIALQLAGLQNAGTASVVISDASMLQPLEQCFALGALYPAAGEHLARLDHAFD HHHHHCCCEEEEEECCCCCCCEEEEECCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH GAVSDVMLNIRSPEMFWASALAVRLEHSLRMPNAATLSRIAEATRSWRDVIQDIYCAMPG HHHHHHHEECCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC ARIRVFPYEVFATQPEAQLSAVTGVDCPHARGAFRLNASARLPELRAELPPRLAKLLPED CEEEEEEEHEECCCCCHHHHHHCCCCCCCCCCEEEECCCCCCCHHHHHCCHHHHHHCCCC EGRWMPFSEAEAARLRESYYDDMMWLVGGADGLAELVEDPNKADATATPPAPDLVVQEDL CCCCCCCCHHHHHHHHHHHHHHHHHEECCCHHHHHHHCCCCCCCCCCCCCCCCCEEHHHH TRGRMHDPDTGRLAGTG HCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA