| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is 99081709
Identifier: 99081709
GI number: 99081709
Start: 1968507
End: 1969112
Strand: Reverse
Name: 99081709
Synonym: TM1040_1868
Alternate gene names: NA
Gene position: 1969112-1968507 (Counterclockwise)
Preceding gene: 99081710
Following gene: 99081707
Centisome position: 61.52
GC content: 60.73
Gene sequence:
>606_bases ATGCTTTGTTGCAGGCTTTGGCCTGCGAATGTGCTCATTGTGCCGATCCTGCCGGAGAGATTTTTCGTGTCCTTGCCTCA CCCTCCGTCTCGTCCACGCCGTCTGCTGCGTGCCTTCGCCGGGGTGGCTCTGGCCGCGGTTGTGACAGGCTCCTGCAGTC TCGACCAGGAGGAACAGGTGCGCGCGCAGGTGCAGGATTGGGTGAAACTCGGCGAGACCTATTATTTCTTCTCGCGGGTC AACTGCACCGCCGCCCTCTTCGAGGTAAAGGCGAGCCGGATCAGCTCCAAGGTCAAGAAGGTCCGCGACGTCGAAGCGGG CATGCGCGCAATCTCCGAGGAGATCGCCGTTGCCTTCGAGGTGGAGGGTTTGTCGCCCACCGAGGTCACGGAAGAAATCA TGAACCGGGATCTGCCGATGGGGATCGGGGTTCTTTCTTCTGGCACCGGCGGCAAGGACTGCATGGCGATCGAAATGGAA GAGGCCTATTTCAACGCGCTTCTGGATCCCACATCGGCGCTGATCTATCACCCGACCGCCAAATTCACCGTGGTCTTCGA CCGGCGCAACCGGCGCATCTTCTATTCTCGCGGGCGCACCTCCTAG
Upstream 100 bases:
>100_bases GGGCTGCTATGGGAGAGCGGGCCAAATTTGCAGCAAAATTTCGGTTTTGAATCAGCAGCGTTAAGGCTTTCTGAAGGGGC CGCACATAAAGCTGAACCAT
Downstream 100 bases:
>100_bases GAGGCGCACCAAGAGGTGCGACACAAGAGAGTGGCGCGAAACAGGACAGTGTCGCGACACATGACGTGGCTTGCTGCGGG CGGCGTGCGGCGCGACATAC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 201; Mature: 201
Protein sequence:
>201_residues MLCCRLWPANVLIVPILPERFFVSLPHPPSRPRRLLRAFAGVALAAVVTGSCSLDQEEQVRAQVQDWVKLGETYYFFSRV NCTAALFEVKASRISSKVKKVRDVEAGMRAISEEIAVAFEVEGLSPTEVTEEIMNRDLPMGIGVLSSGTGGKDCMAIEME EAYFNALLDPTSALIYHPTAKFTVVFDRRNRRIFYSRGRTS
Sequences:
>Translated_201_residues MLCCRLWPANVLIVPILPERFFVSLPHPPSRPRRLLRAFAGVALAAVVTGSCSLDQEEQVRAQVQDWVKLGETYYFFSRV NCTAALFEVKASRISSKVKKVRDVEAGMRAISEEIAVAFEVEGLSPTEVTEEIMNRDLPMGIGVLSSGTGGKDCMAIEME EAYFNALLDPTSALIYHPTAKFTVVFDRRNRRIFYSRGRTS >Mature_201_residues MLCCRLWPANVLIVPILPERFFVSLPHPPSRPRRLLRAFAGVALAAVVTGSCSLDQEEQVRAQVQDWVKLGETYYFFSRV NCTAALFEVKASRISSKVKKVRDVEAGMRAISEEIAVAFEVEGLSPTEVTEEIMNRDLPMGIGVLSSGTGGKDCMAIEME EAYFNALLDPTSALIYHPTAKFTVVFDRRNRRIFYSRGRTS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 22467; Mature: 22467
Theoretical pI: Translated: 8.20; Mature: 8.20
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.5 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 5.5 %Cys+Met (Translated Protein) 2.5 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 5.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLCCRLWPANVLIVPILPERFFVSLPHPPSRPRRLLRAFAGVALAAVVTGSCSLDQEEQV CEEEEECCCCEEEEEECCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH RAQVQDWVKLGETYYFFSRVNCTAALFEVKASRISSKVKKVRDVEAGMRAISEEIAVAFE HHHHHHHHHHCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEE VEGLSPTEVTEEIMNRDLPMGIGVLSSGTGGKDCMAIEMEEAYFNALLDPTSALIYHPTA ECCCCHHHHHHHHHCCCCCCCEEEEECCCCCCCEEEEEEHHHHHHHHCCCCCEEEECCCC KFTVVFDRRNRRIFYSRGRTS EEEEEEECCCCEEEECCCCCC >Mature Secondary Structure MLCCRLWPANVLIVPILPERFFVSLPHPPSRPRRLLRAFAGVALAAVVTGSCSLDQEEQV CEEEEECCCCEEEEEECCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH RAQVQDWVKLGETYYFFSRVNCTAALFEVKASRISSKVKKVRDVEAGMRAISEEIAVAFE HHHHHHHHHHCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEE VEGLSPTEVTEEIMNRDLPMGIGVLSSGTGGKDCMAIEMEEAYFNALLDPTSALIYHPTA ECCCCHHHHHHHHHCCCCCCCEEEEECCCCCCCEEEEEEHHHHHHHHCCCCCEEEECCCC KFTVVFDRRNRRIFYSRGRTS EEEEEEECCCCEEEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA