Definition Ruegeria sp. TM1040, complete genome.
Accession NC_008044
Length 3,200,938

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The map label for this gene is 99081690

Identifier: 99081690

GI number: 99081690

Start: 1949215

End: 1950009

Strand: Reverse

Name: 99081690

Synonym: TM1040_1849

Alternate gene names: NA

Gene position: 1950009-1949215 (Counterclockwise)

Preceding gene: 99081691

Following gene: 99081689

Centisome position: 60.92

GC content: 59.37

Gene sequence:

>795_bases
ATGGACAGGTCCCCATACTATGGCACCGACAAGATCATGGCGCTGCAACGCGCACGTGACGCGCAGGTCGCTGACTTTGC
CGATCTTGCGGGTGCCGTGATCCATGCGCGCACCTTCTCGAGCGATGACCCGGCTGCGCTGGGATGGGACTATCTGAAAA
AGGTGATGGCCGATGAAGGCATGGTCACCTTGCGCGGGGCAGATCAGGCGACGATTGCGGCGGCCAAATCCGAGCTGAGC
GACTTTGACCCCAGGCTTCACGTCTGGGACCTGTTTATGGCCGATGCCGAAACCATTCGCAGGGTCTGTGACCCCATCGT
TCAAAACAGCCTTCCTGCCGGCATGAGACAAATCTCCGAGGCTGAAATGACCCCAGAAAAAGCCAGGGAGGTTCAGGTCT
TTTTGACCCAGCAGGGGGTCTCGCCTTTCTCGACAGATGCGCTTTTGGGGAGGTTGTTTCCCGCCAGATTAATCGCGCTG
CAAAACGCAAGCGACAGGATCGCCGCCGCTGGATTTGCAGCCATGACGCACAATCGCCATAGCCCGTTCTTCAACTCGGC
TTGGGTGGGACTGATTGCGGTTGATCCCGAACTGCGGGGGCTCGGGCTTGGGAAACATGTGGATGCGATATGCAACCTCG
TGGCCGTGACTGAACTTGGCGCGGCCGCCACGATGGAGTTTGTTGCGCCGGACAATGCCCCCTCACGGGCCATGCTCGAA
AGCTGCGGCCTGAGGCAGGTTGAAGGCAAATCGGTGGTTATGTTCTCCACATCCACCGACCGCCTCACGCGCTAG

Upstream 100 bases:

>100_bases
GCATCATTTCTGGTATGCTTTGCTTGGCATGAACCGCGGGGGCTTACCCCTTCGGCCTCGCCCACTGATCATCAGAGGGC
CAGGAGCGAAAGGTATCAAC

Downstream 100 bases:

>100_bases
TCCCCGATCTTTTCAGAGGAGAAACCATGCCAGCCTTTCTGTCTTTTCGCTCCGTCGTTGATCCTGCCGATTGCGATTTT
CTCGGGCATATGAACGTCTC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 264; Mature: 264

Protein sequence:

>264_residues
MDRSPYYGTDKIMALQRARDAQVADFADLAGAVIHARTFSSDDPAALGWDYLKKVMADEGMVTLRGADQATIAAAKSELS
DFDPRLHVWDLFMADAETIRRVCDPIVQNSLPAGMRQISEAEMTPEKAREVQVFLTQQGVSPFSTDALLGRLFPARLIAL
QNASDRIAAAGFAAMTHNRHSPFFNSAWVGLIAVDPELRGLGLGKHVDAICNLVAVTELGAAATMEFVAPDNAPSRAMLE
SCGLRQVEGKSVVMFSTSTDRLTR

Sequences:

>Translated_264_residues
MDRSPYYGTDKIMALQRARDAQVADFADLAGAVIHARTFSSDDPAALGWDYLKKVMADEGMVTLRGADQATIAAAKSELS
DFDPRLHVWDLFMADAETIRRVCDPIVQNSLPAGMRQISEAEMTPEKAREVQVFLTQQGVSPFSTDALLGRLFPARLIAL
QNASDRIAAAGFAAMTHNRHSPFFNSAWVGLIAVDPELRGLGLGKHVDAICNLVAVTELGAAATMEFVAPDNAPSRAMLE
SCGLRQVEGKSVVMFSTSTDRLTR
>Mature_264_residues
MDRSPYYGTDKIMALQRARDAQVADFADLAGAVIHARTFSSDDPAALGWDYLKKVMADEGMVTLRGADQATIAAAKSELS
DFDPRLHVWDLFMADAETIRRVCDPIVQNSLPAGMRQISEAEMTPEKAREVQVFLTQQGVSPFSTDALLGRLFPARLIAL
QNASDRIAAAGFAAMTHNRHSPFFNSAWVGLIAVDPELRGLGLGKHVDAICNLVAVTELGAAATMEFVAPDNAPSRAMLE
SCGLRQVEGKSVVMFSTSTDRLTR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 28616; Mature: 28616

Theoretical pI: Translated: 5.13; Mature: 5.13

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDRSPYYGTDKIMALQRARDAQVADFADLAGAVIHARTFSSDDPAALGWDYLKKVMADEG
CCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHEEECCCCCCCCCCHHHHHHHHHCCC
MVTLRGADQATIAAAKSELSDFDPRLHVWDLFMADAETIRRVCDPIVQNSLPAGMRQISE
EEEEECCCHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
AEMTPEKAREVQVFLTQQGVSPFSTDALLGRLFPARLIALQNASDRIAAAGFAAMTHNRH
HHCCHHHHHHEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCC
SPFFNSAWVGLIAVDPELRGLGLGKHVDAICNLVAVTELGAAATMEFVAPDNAPSRAMLE
CCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCHHEEEEECCCCCCHHHHHH
SCGLRQVEGKSVVMFSTSTDRLTR
HCCCEEECCCEEEEEECCCHHHCC
>Mature Secondary Structure
MDRSPYYGTDKIMALQRARDAQVADFADLAGAVIHARTFSSDDPAALGWDYLKKVMADEG
CCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHEEECCCCCCCCCCHHHHHHHHHCCC
MVTLRGADQATIAAAKSELSDFDPRLHVWDLFMADAETIRRVCDPIVQNSLPAGMRQISE
EEEEECCCHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
AEMTPEKAREVQVFLTQQGVSPFSTDALLGRLFPARLIALQNASDRIAAAGFAAMTHNRH
HHCCHHHHHHEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCC
SPFFNSAWVGLIAVDPELRGLGLGKHVDAICNLVAVTELGAAATMEFVAPDNAPSRAMLE
CCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCHHEEEEECCCCCCHHHHHH
SCGLRQVEGKSVVMFSTSTDRLTR
HCCCEEECCCEEEEEECCCHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA