Definition Ruegeria sp. TM1040, complete genome.
Accession NC_008044
Length 3,200,938

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The map label for this gene is 99081691

Identifier: 99081691

GI number: 99081691

Start: 1950214

End: 1950744

Strand: Reverse

Name: 99081691

Synonym: TM1040_1850

Alternate gene names: NA

Gene position: 1950744-1950214 (Counterclockwise)

Preceding gene: 99081692

Following gene: 99081690

Centisome position: 60.94

GC content: 61.39

Gene sequence:

>531_bases
ATGCATCCCGTCATCTATGATGTCGCCGTCTCGCTCGACGGCTTTATCTCCGGTCCGGCCGGAGACATTTCGAAATTCGC
CCATGAAGGCCCGGTCGTCGAAGACTACTACAACCGGCTCGGTGGCTATAAACTGGCGCTCATGGGGCGCAAGACCTACG
AGTTCGGATATGAATTCGGTATGGAGCCCGGTCAAAACCCCTATCCGCACATGCGGTCGATTGTGGTTTCCGACAGTCTG
CAATTGCCCGAGACCTCCGAGGTTACTGTCCTGAAACGCCCCGGCGCCGAGGGCCTCCGCGCCGAGATCGCGCGCGCCGA
GGGGCCTGTCTATCTCTGCGGGGGCGGCGCCTTTGCGGGTTGGATGCTCAAGCATCAGCTGATCGACAGGCTCATCCTCA
AACGCGCGCCCTGTGTCTTGGGTCAAGGCGTGCCGCTCTTTGGCGCAGATGCCCCGGCGGTGACAATGGAGCGCACCGCG
ACGACCCCATACCAGAACGGCTACCTCCTGGAGCGGTTCTTGTTGCGCTAA

Upstream 100 bases:

>100_bases
CGTCCTTCCACGCAAGAGGAGTGCCCTGACAGTGACCAAGTAAGTTCCACGACAATCAAAGCCCACGGGCTTTACTGGAA
CTCTCACGCAGGAGCACAGC

Downstream 100 bases:

>100_bases
GCCCGGCGCAGGTTTTGCAACACCGATCCCGTCCGGCGTATGCGCTGGGCGGGGCATGGGGCGGGATGCCGAACCGCGCT
CGGCCTGAGCGACGGTGCGC

Product: bifunctional deaminase-reductase-like

Products: NA

Alternate protein names: Bifunctional Deaminase-Reductase Domain Protein; Bifunctional Deaminase-Reductase Domain-Containing Protein; Dihydrofolate Reductase; Dihydrofolate Reductase Family Protein; Bifunctional Deaminase-Reductase-Like; RibD Domain-Containing Protein; Riboflavin Biosynthesis RibD Domain-Containing Protein; Ribd Domain Protein; Riboflavin Biosynthesis Protein RibD

Number of amino acids: Translated: 176; Mature: 176

Protein sequence:

>176_residues
MHPVIYDVAVSLDGFISGPAGDISKFAHEGPVVEDYYNRLGGYKLALMGRKTYEFGYEFGMEPGQNPYPHMRSIVVSDSL
QLPETSEVTVLKRPGAEGLRAEIARAEGPVYLCGGGAFAGWMLKHQLIDRLILKRAPCVLGQGVPLFGADAPAVTMERTA
TTPYQNGYLLERFLLR

Sequences:

>Translated_176_residues
MHPVIYDVAVSLDGFISGPAGDISKFAHEGPVVEDYYNRLGGYKLALMGRKTYEFGYEFGMEPGQNPYPHMRSIVVSDSL
QLPETSEVTVLKRPGAEGLRAEIARAEGPVYLCGGGAFAGWMLKHQLIDRLILKRAPCVLGQGVPLFGADAPAVTMERTA
TTPYQNGYLLERFLLR
>Mature_176_residues
MHPVIYDVAVSLDGFISGPAGDISKFAHEGPVVEDYYNRLGGYKLALMGRKTYEFGYEFGMEPGQNPYPHMRSIVVSDSL
QLPETSEVTVLKRPGAEGLRAEIARAEGPVYLCGGGAFAGWMLKHQLIDRLILKRAPCVLGQGVPLFGADAPAVTMERTA
TTPYQNGYLLERFLLR

Specific function: Unknown

COG id: COG0262

COG function: function code H; Dihydrofolate reductase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 19309; Mature: 19309

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHPVIYDVAVSLDGFISGPAGDISKFAHEGPVVEDYYNRLGGYKLALMGRKTYEFGYEFG
CCCEEEEEEEECCCCCCCCCHHHHHHHHCCCCHHHHHHHHCCEEEEEECCCHHHHHHHCC
MEPGQNPYPHMRSIVVSDSLQLPETSEVTVLKRPGAEGLRAEIARAEGPVYLCGGGAFAG
CCCCCCCCCHHHEEHCCCCCCCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEECCCHHHH
WMLKHQLIDRLILKRAPCVLGQGVPLFGADAPAVTMERTATTPYQNGYLLERFLLR
HHHHHHHHHHHHHHHCCHHHCCCCCCCCCCCCCEEEECCCCCCCCCCHHHHHHHCC
>Mature Secondary Structure
MHPVIYDVAVSLDGFISGPAGDISKFAHEGPVVEDYYNRLGGYKLALMGRKTYEFGYEFG
CCCEEEEEEEECCCCCCCCCHHHHHHHHCCCCHHHHHHHHCCEEEEEECCCHHHHHHHCC
MEPGQNPYPHMRSIVVSDSLQLPETSEVTVLKRPGAEGLRAEIARAEGPVYLCGGGAFAG
CCCCCCCCCHHHEEHCCCCCCCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEECCCHHHH
WMLKHQLIDRLILKRAPCVLGQGVPLFGADAPAVTMERTATTPYQNGYLLERFLLR
HHHHHHHHHHHHHHHCCHHHCCCCCCCCCCCCCEEEECCCCCCCCCCHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA