| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is 99081691
Identifier: 99081691
GI number: 99081691
Start: 1950214
End: 1950744
Strand: Reverse
Name: 99081691
Synonym: TM1040_1850
Alternate gene names: NA
Gene position: 1950744-1950214 (Counterclockwise)
Preceding gene: 99081692
Following gene: 99081690
Centisome position: 60.94
GC content: 61.39
Gene sequence:
>531_bases ATGCATCCCGTCATCTATGATGTCGCCGTCTCGCTCGACGGCTTTATCTCCGGTCCGGCCGGAGACATTTCGAAATTCGC CCATGAAGGCCCGGTCGTCGAAGACTACTACAACCGGCTCGGTGGCTATAAACTGGCGCTCATGGGGCGCAAGACCTACG AGTTCGGATATGAATTCGGTATGGAGCCCGGTCAAAACCCCTATCCGCACATGCGGTCGATTGTGGTTTCCGACAGTCTG CAATTGCCCGAGACCTCCGAGGTTACTGTCCTGAAACGCCCCGGCGCCGAGGGCCTCCGCGCCGAGATCGCGCGCGCCGA GGGGCCTGTCTATCTCTGCGGGGGCGGCGCCTTTGCGGGTTGGATGCTCAAGCATCAGCTGATCGACAGGCTCATCCTCA AACGCGCGCCCTGTGTCTTGGGTCAAGGCGTGCCGCTCTTTGGCGCAGATGCCCCGGCGGTGACAATGGAGCGCACCGCG ACGACCCCATACCAGAACGGCTACCTCCTGGAGCGGTTCTTGTTGCGCTAA
Upstream 100 bases:
>100_bases CGTCCTTCCACGCAAGAGGAGTGCCCTGACAGTGACCAAGTAAGTTCCACGACAATCAAAGCCCACGGGCTTTACTGGAA CTCTCACGCAGGAGCACAGC
Downstream 100 bases:
>100_bases GCCCGGCGCAGGTTTTGCAACACCGATCCCGTCCGGCGTATGCGCTGGGCGGGGCATGGGGCGGGATGCCGAACCGCGCT CGGCCTGAGCGACGGTGCGC
Product: bifunctional deaminase-reductase-like
Products: NA
Alternate protein names: Bifunctional Deaminase-Reductase Domain Protein; Bifunctional Deaminase-Reductase Domain-Containing Protein; Dihydrofolate Reductase; Dihydrofolate Reductase Family Protein; Bifunctional Deaminase-Reductase-Like; RibD Domain-Containing Protein; Riboflavin Biosynthesis RibD Domain-Containing Protein; Ribd Domain Protein; Riboflavin Biosynthesis Protein RibD
Number of amino acids: Translated: 176; Mature: 176
Protein sequence:
>176_residues MHPVIYDVAVSLDGFISGPAGDISKFAHEGPVVEDYYNRLGGYKLALMGRKTYEFGYEFGMEPGQNPYPHMRSIVVSDSL QLPETSEVTVLKRPGAEGLRAEIARAEGPVYLCGGGAFAGWMLKHQLIDRLILKRAPCVLGQGVPLFGADAPAVTMERTA TTPYQNGYLLERFLLR
Sequences:
>Translated_176_residues MHPVIYDVAVSLDGFISGPAGDISKFAHEGPVVEDYYNRLGGYKLALMGRKTYEFGYEFGMEPGQNPYPHMRSIVVSDSL QLPETSEVTVLKRPGAEGLRAEIARAEGPVYLCGGGAFAGWMLKHQLIDRLILKRAPCVLGQGVPLFGADAPAVTMERTA TTPYQNGYLLERFLLR >Mature_176_residues MHPVIYDVAVSLDGFISGPAGDISKFAHEGPVVEDYYNRLGGYKLALMGRKTYEFGYEFGMEPGQNPYPHMRSIVVSDSL QLPETSEVTVLKRPGAEGLRAEIARAEGPVYLCGGGAFAGWMLKHQLIDRLILKRAPCVLGQGVPLFGADAPAVTMERTA TTPYQNGYLLERFLLR
Specific function: Unknown
COG id: COG0262
COG function: function code H; Dihydrofolate reductase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 19309; Mature: 19309
Theoretical pI: Translated: 6.51; Mature: 6.51
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 3.4 %Met (Mature Protein) 4.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MHPVIYDVAVSLDGFISGPAGDISKFAHEGPVVEDYYNRLGGYKLALMGRKTYEFGYEFG CCCEEEEEEEECCCCCCCCCHHHHHHHHCCCCHHHHHHHHCCEEEEEECCCHHHHHHHCC MEPGQNPYPHMRSIVVSDSLQLPETSEVTVLKRPGAEGLRAEIARAEGPVYLCGGGAFAG CCCCCCCCCHHHEEHCCCCCCCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEECCCHHHH WMLKHQLIDRLILKRAPCVLGQGVPLFGADAPAVTMERTATTPYQNGYLLERFLLR HHHHHHHHHHHHHHHCCHHHCCCCCCCCCCCCCEEEECCCCCCCCCCHHHHHHHCC >Mature Secondary Structure MHPVIYDVAVSLDGFISGPAGDISKFAHEGPVVEDYYNRLGGYKLALMGRKTYEFGYEFG CCCEEEEEEEECCCCCCCCCHHHHHHHHCCCCHHHHHHHHCCEEEEEECCCHHHHHHHCC MEPGQNPYPHMRSIVVSDSLQLPETSEVTVLKRPGAEGLRAEIARAEGPVYLCGGGAFAG CCCCCCCCCHHHEEHCCCCCCCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEECCCHHHH WMLKHQLIDRLILKRAPCVLGQGVPLFGADAPAVTMERTATTPYQNGYLLERFLLR HHHHHHHHHHHHHHHCCHHHCCCCCCCCCCCCCEEEECCCCCCCCCCHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA