Definition Ruegeria sp. TM1040, complete genome.
Accession NC_008044
Length 3,200,938

Click here to switch to the map view.

The map label for this gene is 99081689

Identifier: 99081689

GI number: 99081689

Start: 1948766

End: 1949188

Strand: Reverse

Name: 99081689

Synonym: TM1040_1848

Alternate gene names: NA

Gene position: 1949188-1948766 (Counterclockwise)

Preceding gene: 99081690

Following gene: 99081688

Centisome position: 60.89

GC content: 56.97

Gene sequence:

>423_bases
ATGCCAGCCTTTCTGTCTTTTCGCTCCGTCGTTGATCCTGCCGATTGCGATTTTCTCGGGCATATGAACGTCTCACGCTA
TTTCGCGGCCTGCTCTGATGGGGTGTTTGCCATACAGTCGGAGATGGGTCTGACCGCCTCCGATATGCGCGAGGGGCGGC
GGCTCTCGTTTGCCGTGGTGAACGTGCAAAGCAACTTCCGGGCAGAGCTGGCGGCAGGGGATGCGATCCGGCTGGAAACA
AGCATCATCGATGTGGGAACAAAATCGATGACATTTCGCCACCGTATGTTCCGCGCCGATGAAAATCTGCTCGCCTTTGA
GACGGTCTTCAAATGCGTGATGTTTGACCTTGAGGCGCGGATCTCCAGAGACATCCCGGACGAGGTGCGTGCCCGAGCGT
CACAATTTCTCGAGGAGGCCTGA

Upstream 100 bases:

>100_bases
GCTGCGGCCTGAGGCAGGTTGAAGGCAAATCGGTGGTTATGTTCTCCACATCCACCGACCGCCTCACGCGCTAGTCCCCG
ATCTTTTCAGAGGAGAAACC

Downstream 100 bases:

>100_bases
AGGCCGCATCAGGCCCTGTTCGCCGATGCCGCTGACCCGGATCGGCCATGATGAGAGGCCGCTTTGCCGGGGCCGCGTGG
CCTTGGGTCGGGCGGTGGCG

Product: thioesterase superfamily protein

Products: NA

Alternate protein names: Thioesterase-Like Protein

Number of amino acids: Translated: 140; Mature: 139

Protein sequence:

>140_residues
MPAFLSFRSVVDPADCDFLGHMNVSRYFAACSDGVFAIQSEMGLTASDMREGRRLSFAVVNVQSNFRAELAAGDAIRLET
SIIDVGTKSMTFRHRMFRADENLLAFETVFKCVMFDLEARISRDIPDEVRARASQFLEEA

Sequences:

>Translated_140_residues
MPAFLSFRSVVDPADCDFLGHMNVSRYFAACSDGVFAIQSEMGLTASDMREGRRLSFAVVNVQSNFRAELAAGDAIRLET
SIIDVGTKSMTFRHRMFRADENLLAFETVFKCVMFDLEARISRDIPDEVRARASQFLEEA
>Mature_139_residues
PAFLSFRSVVDPADCDFLGHMNVSRYFAACSDGVFAIQSEMGLTASDMREGRRLSFAVVNVQSNFRAELAAGDAIRLETS
IIDVGTKSMTFRHRMFRADENLLAFETVFKCVMFDLEARISRDIPDEVRARASQFLEEA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 15731; Mature: 15600

Theoretical pI: Translated: 4.79; Mature: 4.79

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
5.0 %Met     (Translated Protein)
7.1 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
6.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPAFLSFRSVVDPADCDFLGHMNVSRYFAACSDGVFAIQSEMGLTASDMREGRRLSFAVV
CCCCCCHHHCCCCCCCCEECCCCHHHHHHHHCCCEEEEHHCCCCCHHHHHCCCEEEEEEE
NVQSNFRAELAAGDAIRLETSIIDVGTKSMTFRHRMFRADENLLAFETVFKCVMFDLEAR
EECCCCEEHHCCCCEEEEEEEEEECCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
ISRDIPDEVRARASQFLEEA
HCCCCCHHHHHHHHHHHHCC
>Mature Secondary Structure 
PAFLSFRSVVDPADCDFLGHMNVSRYFAACSDGVFAIQSEMGLTASDMREGRRLSFAVV
CCCCCHHHCCCCCCCCEECCCCHHHHHHHHCCCEEEEHHCCCCCHHHHHCCCEEEEEEE
NVQSNFRAELAAGDAIRLETSIIDVGTKSMTFRHRMFRADENLLAFETVFKCVMFDLEAR
EECCCCEEHHCCCCEEEEEEEEEECCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
ISRDIPDEVRARASQFLEEA
HCCCCCHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA