| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is 99081689
Identifier: 99081689
GI number: 99081689
Start: 1948766
End: 1949188
Strand: Reverse
Name: 99081689
Synonym: TM1040_1848
Alternate gene names: NA
Gene position: 1949188-1948766 (Counterclockwise)
Preceding gene: 99081690
Following gene: 99081688
Centisome position: 60.89
GC content: 56.97
Gene sequence:
>423_bases ATGCCAGCCTTTCTGTCTTTTCGCTCCGTCGTTGATCCTGCCGATTGCGATTTTCTCGGGCATATGAACGTCTCACGCTA TTTCGCGGCCTGCTCTGATGGGGTGTTTGCCATACAGTCGGAGATGGGTCTGACCGCCTCCGATATGCGCGAGGGGCGGC GGCTCTCGTTTGCCGTGGTGAACGTGCAAAGCAACTTCCGGGCAGAGCTGGCGGCAGGGGATGCGATCCGGCTGGAAACA AGCATCATCGATGTGGGAACAAAATCGATGACATTTCGCCACCGTATGTTCCGCGCCGATGAAAATCTGCTCGCCTTTGA GACGGTCTTCAAATGCGTGATGTTTGACCTTGAGGCGCGGATCTCCAGAGACATCCCGGACGAGGTGCGTGCCCGAGCGT CACAATTTCTCGAGGAGGCCTGA
Upstream 100 bases:
>100_bases GCTGCGGCCTGAGGCAGGTTGAAGGCAAATCGGTGGTTATGTTCTCCACATCCACCGACCGCCTCACGCGCTAGTCCCCG ATCTTTTCAGAGGAGAAACC
Downstream 100 bases:
>100_bases AGGCCGCATCAGGCCCTGTTCGCCGATGCCGCTGACCCGGATCGGCCATGATGAGAGGCCGCTTTGCCGGGGCCGCGTGG CCTTGGGTCGGGCGGTGGCG
Product: thioesterase superfamily protein
Products: NA
Alternate protein names: Thioesterase-Like Protein
Number of amino acids: Translated: 140; Mature: 139
Protein sequence:
>140_residues MPAFLSFRSVVDPADCDFLGHMNVSRYFAACSDGVFAIQSEMGLTASDMREGRRLSFAVVNVQSNFRAELAAGDAIRLET SIIDVGTKSMTFRHRMFRADENLLAFETVFKCVMFDLEARISRDIPDEVRARASQFLEEA
Sequences:
>Translated_140_residues MPAFLSFRSVVDPADCDFLGHMNVSRYFAACSDGVFAIQSEMGLTASDMREGRRLSFAVVNVQSNFRAELAAGDAIRLET SIIDVGTKSMTFRHRMFRADENLLAFETVFKCVMFDLEARISRDIPDEVRARASQFLEEA >Mature_139_residues PAFLSFRSVVDPADCDFLGHMNVSRYFAACSDGVFAIQSEMGLTASDMREGRRLSFAVVNVQSNFRAELAAGDAIRLETS IIDVGTKSMTFRHRMFRADENLLAFETVFKCVMFDLEARISRDIPDEVRARASQFLEEA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 15731; Mature: 15600
Theoretical pI: Translated: 4.79; Mature: 4.79
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.1 %Cys (Translated Protein) 5.0 %Met (Translated Protein) 7.1 %Cys+Met (Translated Protein) 2.2 %Cys (Mature Protein) 4.3 %Met (Mature Protein) 6.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPAFLSFRSVVDPADCDFLGHMNVSRYFAACSDGVFAIQSEMGLTASDMREGRRLSFAVV CCCCCCHHHCCCCCCCCEECCCCHHHHHHHHCCCEEEEHHCCCCCHHHHHCCCEEEEEEE NVQSNFRAELAAGDAIRLETSIIDVGTKSMTFRHRMFRADENLLAFETVFKCVMFDLEAR EECCCCEEHHCCCCEEEEEEEEEECCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH ISRDIPDEVRARASQFLEEA HCCCCCHHHHHHHHHHHHCC >Mature Secondary Structure PAFLSFRSVVDPADCDFLGHMNVSRYFAACSDGVFAIQSEMGLTASDMREGRRLSFAVV CCCCCHHHCCCCCCCCEECCCCHHHHHHHHCCCEEEEHHCCCCCHHHHHCCCEEEEEEE NVQSNFRAELAAGDAIRLETSIIDVGTKSMTFRHRMFRADENLLAFETVFKCVMFDLEAR EECCCCEEHHCCCCEEEEEEEEEECCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH ISRDIPDEVRARASQFLEEA HCCCCCHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA