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The map label for this gene is spsC [H]

Identifier: 99081681

GI number: 99081681

Start: 1941291

End: 1942529

Strand: Direct

Name: spsC [H]

Synonym: TM1040_1840

Alternate gene names: 99081681

Gene position: 1941291-1942529 (Clockwise)

Preceding gene: 99081680

Following gene: 99081684

Centisome position: 60.65

GC content: 63.12

Gene sequence:

>1239_bases
ATGAAGCAGGCATCCTCTCCACAGGTCCCGAACACCGAGGTTCCAAACGTGCACCAGGGCGAACCGATCCCTGAGGCGGC
GCGTGACGCGATCGAGGCCTTGATGCAATCAGGCGATCTGTTTCGCTATACCGCGCCGCAGGATGCGCCGGTCTCGCTCC
TTGAGACAGAGTTTGCCGAGCTGTTGGGGTCGAAATATGCGCTGGCGGTGTCGTCCTGTTCGGCGGCGCTGTTCTTGTCG
CTGAAGGCGCTGGATCTGCCCCGGGATGCGCGGGTCTTGATCCCCGGCTTTACCTTTGCGGCGGTGCCGTCATCGGTGGT
CCATGCGGACTGTGTGCCGGTGCTTTGCGAGGTCGGAGAGAACTACCGCATCAACATGGCCGATTTCGAGGCCAAGCTCG
ATCAGGACATCGCGGCGGTGATCATCTCACACATGCGCGGGCACACCTCGGACATGGACGCGATCATGGCGCTCTGCGAG
GCGCGCGACATTCCCGTAGTCGAGGATGCGGCCCATTCGCTTGGTACCACCTGGCACGGTCGCAACATCGGCACGATCGG
CAAAGTGGGCTGTTTCTCGTTTCAGTCCTACAAGATGCTGAACGCCGGCGAAGGCGGGATCCTCGTGACCAATGACGCCG
ATGTGGTGGCGCGCGCGGTGATCATGTCCGGCGCCTACGAGCACAACTGGCAGAAACACAAACCCGCCCGTGGCGACAAT
GGCACCGCGCTGGCAGAGGCTTTTGGCCGCTGGCAGAACCTGCTGCCGCTTTATAACCTGCGGATGAGCAACCTTTCGGC
CGCGGTCATTCGCCCCCAGATCCCCGAGCTCGCGCGCCGGGTCGCGGACGGGCTGAAGAACCACGACTATGTGGCGGCAA
AACTGAATGCGCATGCCAATTTCCACGTCCCCGCGCCGCTGGCGCCGGAGCGGCGCGCCCCGGACTCGATCCAGTTCAAC
CTGGTGGGCATGGATGATGCGCAGATCGAGGCCTTTGCAAAGGCCACCGCCGACAAAGGTGTGAAGGTTCAGATCTTTGG
CCGCTCGACGGACAACGCGCGCGCGTTCTGGAACTGGCAGTTCCTCAAGGATCTGCCAGAGTTGCCTGAAACCCGCGCCA
TGCTGATGCGCGCCTGCGATGTGCGCCTGCCGGTCCGGTTGACGCAAGACGAGTTGGACGTGATCGCCCAAATCCTGCTG
TCCTCGGTCGAGGAAACCATGGCCCGCGCCGCCGCCTGA

Upstream 100 bases:

>100_bases
TGAAATTCCTGTCAACCAAACCCCGGAACGCGGGGGACTCCTTGGCATTGTTGCGCCGTTGTTTTATAATTTTGAAAAGG
TAAATTCAGGATTTTGAAAT

Downstream 100 bases:

>100_bases
GGCAGCCCCCCCTTGCACCATCCCAATAGGGCCGCGTCAGAGCGCGGCCCTATCTTGTTGAGACCCTACATCAGCGCCCG
ATCCCCCGCCGCGCGACAGC

Product: DegT/DnrJ/EryC1/StrS aminotransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 412; Mature: 412

Protein sequence:

>412_residues
MKQASSPQVPNTEVPNVHQGEPIPEAARDAIEALMQSGDLFRYTAPQDAPVSLLETEFAELLGSKYALAVSSCSAALFLS
LKALDLPRDARVLIPGFTFAAVPSSVVHADCVPVLCEVGENYRINMADFEAKLDQDIAAVIISHMRGHTSDMDAIMALCE
ARDIPVVEDAAHSLGTTWHGRNIGTIGKVGCFSFQSYKMLNAGEGGILVTNDADVVARAVIMSGAYEHNWQKHKPARGDN
GTALAEAFGRWQNLLPLYNLRMSNLSAAVIRPQIPELARRVADGLKNHDYVAAKLNAHANFHVPAPLAPERRAPDSIQFN
LVGMDDAQIEAFAKATADKGVKVQIFGRSTDNARAFWNWQFLKDLPELPETRAMLMRACDVRLPVRLTQDELDVIAQILL
SSVEETMARAAA

Sequences:

>Translated_412_residues
MKQASSPQVPNTEVPNVHQGEPIPEAARDAIEALMQSGDLFRYTAPQDAPVSLLETEFAELLGSKYALAVSSCSAALFLS
LKALDLPRDARVLIPGFTFAAVPSSVVHADCVPVLCEVGENYRINMADFEAKLDQDIAAVIISHMRGHTSDMDAIMALCE
ARDIPVVEDAAHSLGTTWHGRNIGTIGKVGCFSFQSYKMLNAGEGGILVTNDADVVARAVIMSGAYEHNWQKHKPARGDN
GTALAEAFGRWQNLLPLYNLRMSNLSAAVIRPQIPELARRVADGLKNHDYVAAKLNAHANFHVPAPLAPERRAPDSIQFN
LVGMDDAQIEAFAKATADKGVKVQIFGRSTDNARAFWNWQFLKDLPELPETRAMLMRACDVRLPVRLTQDELDVIAQILL
SSVEETMARAAA
>Mature_412_residues
MKQASSPQVPNTEVPNVHQGEPIPEAARDAIEALMQSGDLFRYTAPQDAPVSLLETEFAELLGSKYALAVSSCSAALFLS
LKALDLPRDARVLIPGFTFAAVPSSVVHADCVPVLCEVGENYRINMADFEAKLDQDIAAVIISHMRGHTSDMDAIMALCE
ARDIPVVEDAAHSLGTTWHGRNIGTIGKVGCFSFQSYKMLNAGEGGILVTNDADVVARAVIMSGAYEHNWQKHKPARGDN
GTALAEAFGRWQNLLPLYNLRMSNLSAAVIRPQIPELARRVADGLKNHDYVAAKLNAHANFHVPAPLAPERRAPDSIQFN
LVGMDDAQIEAFAKATADKGVKVQIFGRSTDNARAFWNWQFLKDLPELPETRAMLMRACDVRLPVRLTQDELDVIAQILL
SSVEETMARAAA

Specific function: Unknown

COG id: COG0399

COG function: function code M; Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the degT/dnrJ/eryC1 family [H]

Homologues:

Organism=Escherichia coli, GI145693159, Length=251, Percent_Identity=27.4900398406374, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI2367285, Length=264, Percent_Identity=30.6818181818182, Blast_Score=97, Evalue=1e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000653
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422 [H]

Pfam domain/function: PF01041 DegT_DnrJ_EryC1 [H]

EC number: NA

Molecular weight: Translated: 44879; Mature: 44879

Theoretical pI: Translated: 5.42; Mature: 5.42

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKQASSPQVPNTEVPNVHQGEPIPEAARDAIEALMQSGDLFRYTAPQDAPVSLLETEFAE
CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEECCCCCCCHHHHHHHHHH
LLGSKYALAVSSCSAALFLSLKALDLPRDARVLIPGFTFAAVPSSVVHADCVPVLCEVGE
HHCCCCEEEHHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHCCCHHHHHHHHHHHHHCCC
NYRINMADFEAKLDQDIAAVIISHMRGHTSDMDAIMALCEARDIPVVEDAAHSLGTTWHG
CCEEEHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCHHHHHHHCCCCCCC
RNIGTIGKVGCFSFQSYKMLNAGEGGILVTNDADVVARAVIMSGAYEHNWQKHKPARGDN
CCCCCCCCHHHCCHHHEEEEECCCCCEEEECCHHHHHHHHHHCCCHHCCCCCCCCCCCCC
GTALAEAFGRWQNLLPLYNLRMSNLSAAVIRPQIPELARRVADGLKNHDYVAAKLNAHAN
CHHHHHHHHHHHHCCHHHHHHHHCCCHHHCCCCHHHHHHHHHHHCCCCCEEEEEEECCCE
FHVPAPLAPERRAPDSIQFNLVGMDDAQIEAFAKATADKGVKVQIFGRSTDNARAFWNWQ
EECCCCCCCCCCCCCCEEEEEEECCHHHHHHHHHHHCCCCCEEEEEECCCCCCEEEEEHH
FLKDLPELPETRAMLMRACDVRLPVRLTQDELDVIAQILLSSVEETMARAAA
HHHHCCCCCHHHHHHHHHHCCCCCEEECHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MKQASSPQVPNTEVPNVHQGEPIPEAARDAIEALMQSGDLFRYTAPQDAPVSLLETEFAE
CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEECCCCCCCHHHHHHHHHH
LLGSKYALAVSSCSAALFLSLKALDLPRDARVLIPGFTFAAVPSSVVHADCVPVLCEVGE
HHCCCCEEEHHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHCCCHHHHHHHHHHHHHCCC
NYRINMADFEAKLDQDIAAVIISHMRGHTSDMDAIMALCEARDIPVVEDAAHSLGTTWHG
CCEEEHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCHHHHHHHCCCCCCC
RNIGTIGKVGCFSFQSYKMLNAGEGGILVTNDADVVARAVIMSGAYEHNWQKHKPARGDN
CCCCCCCCHHHCCHHHEEEEECCCCCEEEECCHHHHHHHHHHCCCHHCCCCCCCCCCCCC
GTALAEAFGRWQNLLPLYNLRMSNLSAAVIRPQIPELARRVADGLKNHDYVAAKLNAHAN
CHHHHHHHHHHHHCCHHHHHHHHCCCHHHCCCCHHHHHHHHHHHCCCCCEEEEEEECCCE
FHVPAPLAPERRAPDSIQFNLVGMDDAQIEAFAKATADKGVKVQIFGRSTDNARAFWNWQ
EECCCCCCCCCCCCCCEEEEEEECCHHHHHHHHHHHCCCCCEEEEEECCCCCCEEEEEHH
FLKDLPELPETRAMLMRACDVRLPVRLTQDELDVIAQILLSSVEETMARAAA
HHHHCCCCCHHHHHHHHHHCCCCCEEECHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7934828; 9384377 [H]