| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is dctB [H]
Identifier: 99081656
GI number: 99081656
Start: 1907502
End: 1909253
Strand: Reverse
Name: dctB [H]
Synonym: TM1040_1815
Alternate gene names: 99081656
Gene position: 1909253-1907502 (Counterclockwise)
Preceding gene: 99081667
Following gene: 99081655
Centisome position: 59.65
GC content: 64.33
Gene sequence:
>1752_bases ATGTTAAATCCTCGACACCCCCGTCTCGCGCTGGTCGCCAGTGTTGTGCTCTTCATTGTCGTGCTCTCTGCGGTGGTCTG GTCTTCGGCCTATCGACAGGCGCTGACGGCGCTGGCCGAACGCAGCGCCTCTGATCTCGCGCTGGCCTCGGATCGGGTGA GCACGCAGTTGCAGATTTTCCGCGAGCAGGCGGTTCTGGTTGTAGAGCACCCGGCGTTGCAGGCGCTCGAAACCCGCGAG GGACCGGCACGCGCCACAGCGCTCTTGCGCCGGATCGCGGATAAATCCGGCGCACTTGATGTGTTTTACGCCGATGACTC GGGGCGCGTGCTGGCCGCCGCCGAAGGCGTGGCTGGTTCAAACGTCTCGGGTCGGCGGTATTTTCGGCGCGCGATGCAGG GGGCGATGGGCACGGAGCCCATGGTGCTACCCGAGAGCAAGCGACGGGCCTATTTCTTTGCCGCGCCGGATTTCGGCCCG GATGGGCGCGTGCGGGGCACATTGGTGGTTGTTGCGGACATCGAGCTGGTGGAGCAGACGTGGCGCGGCACCCTGCCGCC GGTCTATTTCACCATCGAGGACGGACGCGTCTTTATCTCCAACCGGTTTGAGCTGCTGTTCTGGCGACTGGATGACGACA AGACCGGGCTGATGACCGCAGATGGGGGCGATTTGCCGCTCGAGGTGAAAAAAGTGGGCGAACACGAGATCTGGCAACAG CGTTGGAGCCCGTATTTGCCCGATGAGGCGCTTCATCTCGGGATCGGTCTGCCCGCCATCGGGATGCGCGGAGAGATCCT CGTGGATGTGACCCCAGCGCAGCGGATCGCGGCGCTGCAGACCATGGCGATGGCTGCGGTCTGTCTTGCGTTTGGCACCA TCCTGTTCTGGCTGGCAGAGCGGCGCCGCACGCTGGCAAAGGCCAATGCGGAACTGGAAGAGCGTGTCGAGACGCGCACC CGGGCGCTGTCGGACACCAACCTGCAGCTGCGCCGCGAGGTGCGCGAACGCAAGGAGGCGGAGGCCGCATTGAAACAGGC GCAGGCCGAACTGGTGCAGGCCGACAAGCTCTCGGCGCTGGGGCAGATGTCGGCTGGCATCAGTCATGAGCTCAACCAGC CCTTGATGGCGATCCAGCAGTTTGCCGAGAACGGTCAGGCCTTTCTGGAGCGTGGCAAATCGGAACGCGCGGGCGAGAAC CTCACCCGGATTGCGCAGATGTCGGCCCGGATGGCGCGCATCATCAAGAATCTGCGCGCCTTTGCCCGCAACGAGAGCGA GCCGGTGGGGCGCGTGGATCTGGTGCAGGTCATCGAGGCGGCGGTGGAACTGACAGAGACCCGCCTGCGCGACCATGACG TGACGCTGGACTGGCAACGCCCGGAGGCGCAGTCCGTCTGGGTGCGCGGTGGCGAGGTGCGGCTGACGCAGGTGTTTGTG AACCTCATCAACAACGCCGTGGATGCGATGATGGGACAGGAGGAGCGCCGCGTGCGGATCGTCATCAACGATGGCGCGCG GCTCACGGTGGGCGTGCGCGACATTGGCCCCGGTCTGAAACAGCCCGAAAAGGTCTTTGAGCCGTTCTACTCCACCAAGG CGGTGGGGAGTTCGGAAGGCATGGGGCTGGGGCTGTCCATTTCCTACGGACTGGTGCAAAGCTTTGGCGGCAATATCCGG GGCACCAACACAGAGCACGGCGCCCTGTTCACGGTCGAACTGGACTACTGGAAAGAGGAAACCGCCGCATGA
Upstream 100 bases:
>100_bases ACAAAGTCCGGGTCGGTCGGGGATTGGGTCAGTGTTTTCATAAAATCGGTTTTTGCCGAGGTCTCTGGTCTTGGCAAGGG GGGCTTTGTAATGTGGCGCA
Downstream 100 bases:
>100_bases CGCGCAAGGTGCTGTTGGTTGATGATGATGCGGCCGTTCGCGAGGCGCTGGGCCAGACGCTCGAGCTTGCCGATCTCAAC GCGGTGACGGCGGGGTCGTT
Product: periplasmic sensor signal transduction histidine kinase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 583; Mature: 583
Protein sequence:
>583_residues MLNPRHPRLALVASVVLFIVVLSAVVWSSAYRQALTALAERSASDLALASDRVSTQLQIFREQAVLVVEHPALQALETRE GPARATALLRRIADKSGALDVFYADDSGRVLAAAEGVAGSNVSGRRYFRRAMQGAMGTEPMVLPESKRRAYFFAAPDFGP DGRVRGTLVVVADIELVEQTWRGTLPPVYFTIEDGRVFISNRFELLFWRLDDDKTGLMTADGGDLPLEVKKVGEHEIWQQ RWSPYLPDEALHLGIGLPAIGMRGEILVDVTPAQRIAALQTMAMAAVCLAFGTILFWLAERRRTLAKANAELEERVETRT RALSDTNLQLRREVRERKEAEAALKQAQAELVQADKLSALGQMSAGISHELNQPLMAIQQFAENGQAFLERGKSERAGEN LTRIAQMSARMARIIKNLRAFARNESEPVGRVDLVQVIEAAVELTETRLRDHDVTLDWQRPEAQSVWVRGGEVRLTQVFV NLINNAVDAMMGQEERRVRIVINDGARLTVGVRDIGPGLKQPEKVFEPFYSTKAVGSSEGMGLGLSISYGLVQSFGGNIR GTNTEHGALFTVELDYWKEETAA
Sequences:
>Translated_583_residues MLNPRHPRLALVASVVLFIVVLSAVVWSSAYRQALTALAERSASDLALASDRVSTQLQIFREQAVLVVEHPALQALETRE GPARATALLRRIADKSGALDVFYADDSGRVLAAAEGVAGSNVSGRRYFRRAMQGAMGTEPMVLPESKRRAYFFAAPDFGP DGRVRGTLVVVADIELVEQTWRGTLPPVYFTIEDGRVFISNRFELLFWRLDDDKTGLMTADGGDLPLEVKKVGEHEIWQQ RWSPYLPDEALHLGIGLPAIGMRGEILVDVTPAQRIAALQTMAMAAVCLAFGTILFWLAERRRTLAKANAELEERVETRT RALSDTNLQLRREVRERKEAEAALKQAQAELVQADKLSALGQMSAGISHELNQPLMAIQQFAENGQAFLERGKSERAGEN LTRIAQMSARMARIIKNLRAFARNESEPVGRVDLVQVIEAAVELTETRLRDHDVTLDWQRPEAQSVWVRGGEVRLTQVFV NLINNAVDAMMGQEERRVRIVINDGARLTVGVRDIGPGLKQPEKVFEPFYSTKAVGSSEGMGLGLSISYGLVQSFGGNIR GTNTEHGALFTVELDYWKEETAA >Mature_583_residues MLNPRHPRLALVASVVLFIVVLSAVVWSSAYRQALTALAERSASDLALASDRVSTQLQIFREQAVLVVEHPALQALETRE GPARATALLRRIADKSGALDVFYADDSGRVLAAAEGVAGSNVSGRRYFRRAMQGAMGTEPMVLPESKRRAYFFAAPDFGP DGRVRGTLVVVADIELVEQTWRGTLPPVYFTIEDGRVFISNRFELLFWRLDDDKTGLMTADGGDLPLEVKKVGEHEIWQQ RWSPYLPDEALHLGIGLPAIGMRGEILVDVTPAQRIAALQTMAMAAVCLAFGTILFWLAERRRTLAKANAELEERVETRT RALSDTNLQLRREVRERKEAEAALKQAQAELVQADKLSALGQMSAGISHELNQPLMAIQQFAENGQAFLERGKSERAGEN LTRIAQMSARMARIIKNLRAFARNESEPVGRVDLVQVIEAAVELTETRLRDHDVTLDWQRPEAQSVWVRGGEVRLTQVFV NLINNAVDAMMGQEERRVRIVINDGARLTVGVRDIGPGLKQPEKVFEPFYSTKAVGSSEGMGLGLSISYGLVQSFGGNIR GTNTEHGALFTVELDYWKEETAA
Specific function: Member of the two-component regulatory system dctB/dctD involved in the transport of C4-dicarboxylates. DctB functions as a membrane-associated protein kinase that phosphorylates dctD in response to environmental signals [H]
COG id: COG4191
COG function: function code T; Signal transduction histidine kinase regulating C4-dicarboxylate transport system
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 histidine kinase domain [H]
Homologues:
Organism=Escherichia coli, GI1790436, Length=235, Percent_Identity=30.2127659574468, Blast_Score=91, Evalue=2e-19, Organism=Escherichia coli, GI1788549, Length=236, Percent_Identity=27.1186440677966, Blast_Score=79, Evalue=8e-16,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003594 - InterPro: IPR004358 - InterPro: IPR003661 - InterPro: IPR005467 - InterPro: IPR017055 - InterPro: IPR009082 [H]
Pfam domain/function: PF02518 HATPase_c; PF00512 HisKA [H]
EC number: =2.7.13.3 [H]
Molecular weight: Translated: 64471; Mature: 64471
Theoretical pI: Translated: 6.24; Mature: 6.24
Prosite motif: PS50109 HIS_KIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLNPRHPRLALVASVVLFIVVLSAVVWSSAYRQALTALAERSASDLALASDRVSTQLQIF CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH REQAVLVVEHPALQALETREGPARATALLRRIADKSGALDVFYADDSGRVLAAAEGVAGS HHCCEEEEECCHHHHHHCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCEEEEECCCCCC NVSGRRYFRRAMQGAMGTEPMVLPESKRRAYFFAAPDFGPDGRVRGTLVVVADIELVEQT CCCHHHHHHHHHHCCCCCCCEECCCCCCCEEEEECCCCCCCCCCEEEEEEEECHHHHHHH WRGTLPPVYFTIEDGRVFISNRFELLFWRLDDDKTGLMTADGGDLPLEVKKVGEHEIWQQ HCCCCCCEEEEEECCEEEEECCEEEEEEEECCCCCCEEEECCCCCCCHHHHCCHHHHHHH RWSPYLPDEALHLGIGLPAIGMRGEILVDVTPAQRIAALQTMAMAAVCLAFGTILFWLAE HCCCCCCCHHHEECCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHH RRRTLAKANAELEERVETRTRALSDTNLQLRREVRERKEAEAALKQAQAELVQADKLSAL HHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH GQMSAGISHELNQPLMAIQQFAENGQAFLERGKSERAGENLTRIAQMSARMARIIKNLRA HHHHCCCHHHHCCHHHHHHHHHHCCHHHHHCCCCHHCCHHHHHHHHHHHHHHHHHHHHHH FARNESEPVGRVDLVQVIEAAVELTETRLRDHDVTLDWQRPEAQSVWVRGGEVRLTQVFV HHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCEEEEECCCCHHHHHHH NLINNAVDAMMGQEERRVRIVINDGARLTVGVRDIGPGLKQPEKVFEPFYSTKAVGSSEG HHHHHHHHHHHCCCCCEEEEEEECCCEEEEEHHHCCCCCCCCHHHHHHHHHHHCCCCCCC MGLGLSISYGLVQSFGGNIRGTNTEHGALFTVELDYWKEETAA CCEEEEEHHHHHHHCCCCCCCCCCCCCEEEEEEECCCHHCCCC >Mature Secondary Structure MLNPRHPRLALVASVVLFIVVLSAVVWSSAYRQALTALAERSASDLALASDRVSTQLQIF CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH REQAVLVVEHPALQALETREGPARATALLRRIADKSGALDVFYADDSGRVLAAAEGVAGS HHCCEEEEECCHHHHHHCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCEEEEECCCCCC NVSGRRYFRRAMQGAMGTEPMVLPESKRRAYFFAAPDFGPDGRVRGTLVVVADIELVEQT CCCHHHHHHHHHHCCCCCCCEECCCCCCCEEEEECCCCCCCCCCEEEEEEEECHHHHHHH WRGTLPPVYFTIEDGRVFISNRFELLFWRLDDDKTGLMTADGGDLPLEVKKVGEHEIWQQ HCCCCCCEEEEEECCEEEEECCEEEEEEEECCCCCCEEEECCCCCCCHHHHCCHHHHHHH RWSPYLPDEALHLGIGLPAIGMRGEILVDVTPAQRIAALQTMAMAAVCLAFGTILFWLAE HCCCCCCCHHHEECCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHH RRRTLAKANAELEERVETRTRALSDTNLQLRREVRERKEAEAALKQAQAELVQADKLSAL HHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH GQMSAGISHELNQPLMAIQQFAENGQAFLERGKSERAGENLTRIAQMSARMARIIKNLRA HHHHCCCHHHHCCHHHHHHHHHHCCHHHHHCCCCHHCCHHHHHHHHHHHHHHHHHHHHHH FARNESEPVGRVDLVQVIEAAVELTETRLRDHDVTLDWQRPEAQSVWVRGGEVRLTQVFV HHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCEEEEECCCCHHHHHHH NLINNAVDAMMGQEERRVRIVINDGARLTVGVRDIGPGLKQPEKVFEPFYSTKAVGSSEG HHHHHHHHHHHCCCCCEEEEEEECCCEEEEEHHHCCCCCCCCHHHHHHHHHHHCCCCCCC MGLGLSISYGLVQSFGGNIRGTNTEHGALFTVELDYWKEETAA CCEEEEEHHHHHHHCCCCCCCCCCCCCEEEEEEECCCHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 2134335; 2793824; 11481431; 2551890; 2695394 [H]