| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is cvpA [C]
Identifier: 99081626
GI number: 99081626
Start: 1878733
End: 1879356
Strand: Direct
Name: cvpA [C]
Synonym: TM1040_1785
Alternate gene names: 99081626
Gene position: 1878733-1879356 (Clockwise)
Preceding gene: 99081625
Following gene: 99081627
Centisome position: 58.69
GC content: 57.37
Gene sequence:
>624_bases TTGGCGAATATTTCGGAGCAGGCTAAAAGGCCACTCAAGTTATATTTCGCGGGCAAACAGGCGAGGGACATGGAAGGTTT CACCATTATCGACGGCGCAGTGGCGCTGGTTATCGTTGTATCGGCGCTTCTTGCCTATGCACGCGGCTTTGTCCGCGAGG TCATGGCCATCATCGGCTGGGTCGCCGCTGGTGTTCTCGCCTATATGTTCGCACCACAAGCAGAGCCTCTGATGGCTGAG ATCCCTGTGGTGGGGGATTTCATCGCGGACAGCTGTGAGCTGTCGATGATCGCGGCATTCTTTGCCGTCTTTGCCATCGC CCTGATCGTCGTGTCGTTCTTCACGCCGCTGCTGGCGGGGCTGGTGCAGCGTTCTGCACTGGGTGGTCTCGACAATGGCG CTGGGTTCTTCTTTGGCGTCCTGCGCGGCATCCTGCTCGTAGTGATTGGCTTCTTTGTCTACAACGTCATCATGACCGGG CAGAGCTTTACCATCGTGGATGAGAGCCGCTCGGCTGCGGTCTTCAACCAGGTCATCGGCAAGGTCGAAGAGCAAAACCC CGAGCAAGCGCTGGGCTGGGTAACGCAGAAGTATGAAGAGTTGATCGCCTCCTGCGGTATCTGA
Upstream 100 bases:
>100_bases CAAAAACTTGGTTTCACGGCAGCGATCGCTCCGAGCGGTGGCAAAACTGTTTCTGTCCCCGGCCTGACCCTGCGCCCGGC CGCCGACCTCACAGGATTTG
Downstream 100 bases:
>100_bases GAGACATCATCTACCGAGATTGAGAGGGCGTCCAATTCGGGCGCCCTTTTCATATTCGCGAAAGTGCATGCTGCCCTTTC AGGGGACCGTTCAATCTGTT
Product: colicin V production protein
Products: NA
Alternate protein names: Colicin V Production Protein
Number of amino acids: Translated: 207; Mature: 206
Protein sequence:
>207_residues MANISEQAKRPLKLYFAGKQARDMEGFTIIDGAVALVIVVSALLAYARGFVREVMAIIGWVAAGVLAYMFAPQAEPLMAE IPVVGDFIADSCELSMIAAFFAVFAIALIVVSFFTPLLAGLVQRSALGGLDNGAGFFFGVLRGILLVVIGFFVYNVIMTG QSFTIVDESRSAAVFNQVIGKVEEQNPEQALGWVTQKYEELIASCGI
Sequences:
>Translated_207_residues MANISEQAKRPLKLYFAGKQARDMEGFTIIDGAVALVIVVSALLAYARGFVREVMAIIGWVAAGVLAYMFAPQAEPLMAE IPVVGDFIADSCELSMIAAFFAVFAIALIVVSFFTPLLAGLVQRSALGGLDNGAGFFFGVLRGILLVVIGFFVYNVIMTG QSFTIVDESRSAAVFNQVIGKVEEQNPEQALGWVTQKYEELIASCGI >Mature_206_residues ANISEQAKRPLKLYFAGKQARDMEGFTIIDGAVALVIVVSALLAYARGFVREVMAIIGWVAAGVLAYMFAPQAEPLMAEI PVVGDFIADSCELSMIAAFFAVFAIALIVVSFFTPLLAGLVQRSALGGLDNGAGFFFGVLRGILLVVIGFFVYNVIMTGQ SFTIVDESRSAAVFNQVIGKVEEQNPEQALGWVTQKYEELIASCGI
Specific function: Required For Colicin V Production From Plasmid Incfi Colv3-K30. [C]
COG id: COG1286
COG function: function code R; Uncharacterized membrane protein, required for colicin V production
Gene ontology:
Cell location: Integral Membrane Protein [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 22201; Mature: 22070
Theoretical pI: Translated: 4.35; Mature: 4.35
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MANISEQAKRPLKLYFAGKQARDMEGFTIIDGAVALVIVVSALLAYARGFVREVMAIIGW CCCCCHHHCCCEEEEECCCHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VAAGVLAYMFAPQAEPLMAEIPVVGDFIADSCELSMIAAFFAVFAIALIVVSFFTPLLAG HHHHHHHHHHCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LVQRSALGGLDNGAGFFFGVLRGILLVVIGFFVYNVIMTGQSFTIVDESRSAAVFNQVIG HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHH KVEEQNPEQALGWVTQKYEELIASCGI HHHCCCHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure ANISEQAKRPLKLYFAGKQARDMEGFTIIDGAVALVIVVSALLAYARGFVREVMAIIGW CCCCHHHCCCEEEEECCCHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VAAGVLAYMFAPQAEPLMAEIPVVGDFIADSCELSMIAAFFAVFAIALIVVSFFTPLLAG HHHHHHHHHHCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LVQRSALGGLDNGAGFFFGVLRGILLVVIGFFVYNVIMTGQSFTIVDESRSAAVFNQVIG HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHH KVEEQNPEQALGWVTQKYEELIASCGI HHHCCCHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: NA