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The map label for this gene is radA [H]

Identifier: 99081625

GI number: 99081625

Start: 1877394

End: 1878758

Strand: Direct

Name: radA [H]

Synonym: TM1040_1784

Alternate gene names: 99081625

Gene position: 1877394-1878758 (Clockwise)

Preceding gene: 99081624

Following gene: 99081626

Centisome position: 58.65

GC content: 62.78

Gene sequence:

>1365_bases
ATGGCAAAGACAACATTCTCCTGCTCCGCCTGCGGGGCCTCCTATTCCAAATGGTCCGGTCGCTGCGAGGGCTGCGGTGA
GTGGAATACGATTTCCGAAGACAAGGGGCTGAGCTCTGGAGGACCGGCCAAGAAGTCCCTTGGCGCAATGCGCGGCAAAC
GACTGGCGCTGAGCGATCTGGCCACGCAAGAGACGCCTCCTCCGCGCACCCTTTGTGGTGTGGCAGAGCTTGATCGCGTC
CTTGGAGGCGGCCTGGTCGATGCGTCGGCCATCCTCGTGGGGGGCGATCCCGGGATCGGTAAATCCACGCTGCTGTTGCA
AGCTGCGGCGCAATTTGCACACGCAGGCCTGAAGACGGTCTATGTTTCGGGAGAGGAAGCCTCGGCGCAGGTACGGATGC
GCGCCCAGCGTCTGGGACTGGCACAAGCCCCTGTCAAGCTCGCGGCGGAAACCAACCTGCGCGATATTCTCACCACGCTT
GAGGCGGAAAAACCCCAGCTGGCCATTATCGATTCGATCCAGACCATGTGGGCCGACAATGTGGACAGTGCGCCGGGATC
CGTCAGTCAGGTGCGCGCGGCGGCCCATGAGCTGACCACTTTTGCCAAGACCAATGGTGTCAGCATCATCATGGTGGGCC
ATGTCACCAAGGAAGGCCAGATCGCCGGGCCTCGCGTGGTCGAACATATGGTCGACACGGTCTTGTATTTCGAGGGCGAG
CGCGGCCACCAGTTCCGCATCCTGCGTGCCGTGAAGAACCGCTTTGGCCCTGCCGACGAGATTGGCGTCTTTGAGATGAC
CGGCGGCGGGCTGGCGCAAGTGGTGAACCCTTCGGCCCTGTTTCTGTCCGAACGCGGCCAGCCCTCGCCCGGATCGGTGG
TCTTTGCCGGTATCGAAGGCACCCGTCCGGTCCTCGTGGAAATGCAGGCGCTGGTGGCGCCTTCGCCCCATTCGCAGCCC
CGCCGCGCTGTGGTGGGCTGGGACAGCTCGCGCCTTGCGATGATCCTCGCCGTTCTGGAGGCGCGCTGTGGCATTCCTTT
TGCCGGGCTTGATGTCTATCTCAATGTTGCGGGCGGCATGAAAATCTCTGAACCCGCGGCCGACCTGGCGGTGGCGGCCG
CCCTCCTTAGTGCACGCGAGGACACCGCCCTGCCCGCCGATACGGCAATATTTGGCGAAATATCCCTATCTGGCGCGCTC
AGACCGGCCCCTCAGACCGAAAACCGGTTGAAAGAGGCGCAAAAACTTGGTTTCACGGCAGCGATCGCTCCGAGCGGTGG
CAAAACTGTTTCTGTCCCCGGCCTGACCCTGCGCCCGGCCGCCGACCTCACAGGATTTGTTGGCGAATATTTCGGAGCAG
GCTAA

Upstream 100 bases:

>100_bases
GGCGCTGCCCCCGGCCCTCTGGGCCTCCCCCGGCATATTTTGTGTTAGAAGAAGATTGGCCAGACTTGAACAAACCAGAA
ACATCTGCCACTGATCCCCC

Downstream 100 bases:

>100_bases
AAGGCCACTCAAGTTATATTTCGCGGGCAAACAGGCGAGGGACATGGAAGGTTTCACCATTATCGACGGCGCAGTGGCGC
TGGTTATCGTTGTATCGGCG

Product: DNA repair protein RadA

Products: NA

Alternate protein names: DNA repair protein sms homolog [H]

Number of amino acids: Translated: 454; Mature: 453

Protein sequence:

>454_residues
MAKTTFSCSACGASYSKWSGRCEGCGEWNTISEDKGLSSGGPAKKSLGAMRGKRLALSDLATQETPPPRTLCGVAELDRV
LGGGLVDASAILVGGDPGIGKSTLLLQAAAQFAHAGLKTVYVSGEEASAQVRMRAQRLGLAQAPVKLAAETNLRDILTTL
EAEKPQLAIIDSIQTMWADNVDSAPGSVSQVRAAAHELTTFAKTNGVSIIMVGHVTKEGQIAGPRVVEHMVDTVLYFEGE
RGHQFRILRAVKNRFGPADEIGVFEMTGGGLAQVVNPSALFLSERGQPSPGSVVFAGIEGTRPVLVEMQALVAPSPHSQP
RRAVVGWDSSRLAMILAVLEARCGIPFAGLDVYLNVAGGMKISEPAADLAVAAALLSAREDTALPADTAIFGEISLSGAL
RPAPQTENRLKEAQKLGFTAAIAPSGGKTVSVPGLTLRPAADLTGFVGEYFGAG

Sequences:

>Translated_454_residues
MAKTTFSCSACGASYSKWSGRCEGCGEWNTISEDKGLSSGGPAKKSLGAMRGKRLALSDLATQETPPPRTLCGVAELDRV
LGGGLVDASAILVGGDPGIGKSTLLLQAAAQFAHAGLKTVYVSGEEASAQVRMRAQRLGLAQAPVKLAAETNLRDILTTL
EAEKPQLAIIDSIQTMWADNVDSAPGSVSQVRAAAHELTTFAKTNGVSIIMVGHVTKEGQIAGPRVVEHMVDTVLYFEGE
RGHQFRILRAVKNRFGPADEIGVFEMTGGGLAQVVNPSALFLSERGQPSPGSVVFAGIEGTRPVLVEMQALVAPSPHSQP
RRAVVGWDSSRLAMILAVLEARCGIPFAGLDVYLNVAGGMKISEPAADLAVAAALLSAREDTALPADTAIFGEISLSGAL
RPAPQTENRLKEAQKLGFTAAIAPSGGKTVSVPGLTLRPAADLTGFVGEYFGAG
>Mature_453_residues
AKTTFSCSACGASYSKWSGRCEGCGEWNTISEDKGLSSGGPAKKSLGAMRGKRLALSDLATQETPPPRTLCGVAELDRVL
GGGLVDASAILVGGDPGIGKSTLLLQAAAQFAHAGLKTVYVSGEEASAQVRMRAQRLGLAQAPVKLAAETNLRDILTTLE
AEKPQLAIIDSIQTMWADNVDSAPGSVSQVRAAAHELTTFAKTNGVSIIMVGHVTKEGQIAGPRVVEHMVDTVLYFEGER
GHQFRILRAVKNRFGPADEIGVFEMTGGGLAQVVNPSALFLSERGQPSPGSVVFAGIEGTRPVLVEMQALVAPSPHSQPR
RAVVGWDSSRLAMILAVLEARCGIPFAGLDVYLNVAGGMKISEPAADLAVAAALLSAREDTALPADTAIFGEISLSGALR
PAPQTENRLKEAQKLGFTAAIAPSGGKTVSVPGLTLRPAADLTGFVGEYFGAG

Specific function: May play a role in the repair of endogenous alkylation damage [H]

COG id: COG1066

COG function: function code O; Predicted ATP-dependent serine protease

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the recA family. RadA subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790850, Length=429, Percent_Identity=48.4848484848485, Blast_Score=395, Evalue=1e-111,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR014774
- InterPro:   IPR020588
- InterPro:   IPR004504
- InterPro:   IPR020568 [H]

Pfam domain/function: PF06745 KaiC [H]

EC number: NA

Molecular weight: Translated: 47139; Mature: 47008

Theoretical pI: Translated: 6.78; Mature: 6.78

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKTTFSCSACGASYSKWSGRCEGCGEWNTISEDKGLSSGGPAKKSLGAMRGKRLALSDL
CCCCCCCHHHCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCEEEHHHH
ATQETPPPRTLCGVAELDRVLGGGLVDASAILVGGDPGIGKSTLLLQAAAQFAHAGLKTV
HCCCCCCCHHHHHHHHHHHHHCCCCEECEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEE
YVSGEEASAQVRMRAQRLGLAQAPVKLAAETNLRDILTTLEAEKPQLAIIDSIQTMWADN
EECCCCHHHHHHHHHHHCCCHHCCCHHECCCCHHHHHHHHHCCCCCEEEHHHHHHHHCCC
VDSAPGSVSQVRAAAHELTTFAKTNGVSIIMVGHVTKEGQIAGPRVVEHMVDTVLYFEGE
CCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEEECCCCCCCCHHHHHHHHHHHEEEECC
RGHQFRILRAVKNRFGPADEIGVFEMTGGGLAQVVNPSALFLSERGQPSPGSVVFAGIEG
CCCHHHHHHHHHHHCCCCCCCCEEEECCCCHHHHCCCCEEEEECCCCCCCCCEEEEECCC
TRPVLVEMQALVAPSPHSQPRRAVVGWDSSRLAMILAVLEARCGIPFAGLDVYLNVAGGM
CCCCEEEHHHHHCCCCCCCCCEEEEECCCHHHHHHHHHHHHHCCCCEECCEEEEEECCCC
KISEPAADLAVAAALLSAREDTALPADTAIFGEISLSGALRPAPQTENRLKEAQKLGFTA
EECCCHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEECCCCCCCCCHHHHHHHHHHCCCEE
AIAPSGGKTVSVPGLTLRPAADLTGFVGEYFGAG
EECCCCCCEEECCCEEECCCHHHHHHHHHHHCCC
>Mature Secondary Structure 
AKTTFSCSACGASYSKWSGRCEGCGEWNTISEDKGLSSGGPAKKSLGAMRGKRLALSDL
CCCCCCHHHCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCEEEHHHH
ATQETPPPRTLCGVAELDRVLGGGLVDASAILVGGDPGIGKSTLLLQAAAQFAHAGLKTV
HCCCCCCCHHHHHHHHHHHHHCCCCEECEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEE
YVSGEEASAQVRMRAQRLGLAQAPVKLAAETNLRDILTTLEAEKPQLAIIDSIQTMWADN
EECCCCHHHHHHHHHHHCCCHHCCCHHECCCCHHHHHHHHHCCCCCEEEHHHHHHHHCCC
VDSAPGSVSQVRAAAHELTTFAKTNGVSIIMVGHVTKEGQIAGPRVVEHMVDTVLYFEGE
CCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEEECCCCCCCCHHHHHHHHHHHEEEECC
RGHQFRILRAVKNRFGPADEIGVFEMTGGGLAQVVNPSALFLSERGQPSPGSVVFAGIEG
CCCHHHHHHHHHHHCCCCCCCCEEEECCCCHHHHCCCCEEEEECCCCCCCCCEEEEECCC
TRPVLVEMQALVAPSPHSQPRRAVVGWDSSRLAMILAVLEARCGIPFAGLDVYLNVAGGM
CCCCEEEHHHHHCCCCCCCCCEEEEECCCHHHHHHHHHHHHHCCCCEECCEEEEEECCCC
KISEPAADLAVAAALLSAREDTALPADTAIFGEISLSGALRPAPQTENRLKEAQKLGFTA
EECCCHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEECCCCCCCCCHHHHHHHHHHCCCEE
AIAPSGGKTVSVPGLTLRPAADLTGFVGEYFGAG
EECCCCCCEEECCCEEECCCHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA