Definition Ruegeria sp. TM1040, complete genome.
Accession NC_008044
Length 3,200,938

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The map label for this gene is 99081616

Identifier: 99081616

GI number: 99081616

Start: 1868485

End: 1869480

Strand: Direct

Name: 99081616

Synonym: TM1040_1775

Alternate gene names: NA

Gene position: 1868485-1869480 (Clockwise)

Preceding gene: 99081615

Following gene: 99081617

Centisome position: 58.37

GC content: 61.24

Gene sequence:

>996_bases
ATGCAAGACGACACGGATATTCTCGAGCAGGATCTCTCAGGCCTCAAACCTGCGGAATGGCAGGCTCGGCTGGCAGAGAT
GGCCGAAGAAAACGGCATGTACCAGCCGCTTGGAGAGCGTCATTTTGCGACCTTCATCGATCAGGGCAACACGCTTCTCG
TCACGTTCGAGAGCCGCCAGGGGATCGAGAGCTTTTCCGAAACCGCGCAGCCGCTTGGGTTTGATCTGGTCAAGAACCTC
GGCTGGTCGCATCTGTGCCTGATCTCGGACGGCGATACCTGGTTTCGAGAGCCTCGGATCTACGGGTTCTTTGACCAGTT
GATCGACGACGGGTTCTTTGAAGAATTTGACAACGTGGTCTTTTATGGCGCAGGCCCCTGTGGCTATGCGGCAGCGGCCT
ATTCGGTGGCAGCCCCCGGCGCCACCGTGGTGGCCATCCAGCCGCAGGCGACGCTTGACCCACGGATGACCGAATGGGAT
GACCGCTTCGTCGAGATGCGCCGCACCTCTTTTACGGATCGCTACGGCTACGCGCCGGATATGCTGGATGCGGCCGAACG
GGGCTTTGTGCTCTATGATCCCTATCAATCGCTGGACGCCATGCATGCCGCGCTCTTTGCGCGCCCCAATGTGACCCGCT
TGCGTCTGCCGTGTATGGGCGAAGCCATTCAGACCCGCCTCATCGAGATGGACATCCTCTATCGGATCATGTCGCTCGCG
GGCAGCGGTCGTCTCACCGCAGAGGCCTTCTACAGGCTTGCCCGGGCGCGGCGCGACAATAACGTTTACCTCCGCAACGT
GTTGAACCGGCTCGACTATCTCGAGCGGCCCTATCTCAACATCCTTCTGTGTCGCAATGTGAACGACCGGCGTCGCATGC
CGCGTTTCCGACGCCGCCTACGGGATCTGGAGCGCCGCGCTGCCGAGGGAGAGTTCCGCATGCCGCCGGGTCCCGCTCTG
CCCCCTGATCCGCAACACGGCGACGACGGCCTCTAA

Upstream 100 bases:

>100_bases
AATGGCCGACAATTGGGCCAAGGTTTTTCTAAATTTAGCCTCAATCTCAGCCTAGATGTGACCCCGAGCAAGACCGAAAA
AGGTGTGGCAGGTGGCGCGC

Downstream 100 bases:

>100_bases
GCTGCCTTCCCAAGTTCATGGGGCTGTGCTAACGCCTGCGCCATGACCCAGAGCCTGACGATCACCCGCCCCGACGACTG
GCATCTGCATCTGCGCGACG

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 331; Mature: 331

Protein sequence:

>331_residues
MQDDTDILEQDLSGLKPAEWQARLAEMAEENGMYQPLGERHFATFIDQGNTLLVTFESRQGIESFSETAQPLGFDLVKNL
GWSHLCLISDGDTWFREPRIYGFFDQLIDDGFFEEFDNVVFYGAGPCGYAAAAYSVAAPGATVVAIQPQATLDPRMTEWD
DRFVEMRRTSFTDRYGYAPDMLDAAERGFVLYDPYQSLDAMHAALFARPNVTRLRLPCMGEAIQTRLIEMDILYRIMSLA
GSGRLTAEAFYRLARARRDNNVYLRNVLNRLDYLERPYLNILLCRNVNDRRRMPRFRRRLRDLERRAAEGEFRMPPGPAL
PPDPQHGDDGL

Sequences:

>Translated_331_residues
MQDDTDILEQDLSGLKPAEWQARLAEMAEENGMYQPLGERHFATFIDQGNTLLVTFESRQGIESFSETAQPLGFDLVKNL
GWSHLCLISDGDTWFREPRIYGFFDQLIDDGFFEEFDNVVFYGAGPCGYAAAAYSVAAPGATVVAIQPQATLDPRMTEWD
DRFVEMRRTSFTDRYGYAPDMLDAAERGFVLYDPYQSLDAMHAALFARPNVTRLRLPCMGEAIQTRLIEMDILYRIMSLA
GSGRLTAEAFYRLARARRDNNVYLRNVLNRLDYLERPYLNILLCRNVNDRRRMPRFRRRLRDLERRAAEGEFRMPPGPAL
PPDPQHGDDGL
>Mature_331_residues
MQDDTDILEQDLSGLKPAEWQARLAEMAEENGMYQPLGERHFATFIDQGNTLLVTFESRQGIESFSETAQPLGFDLVKNL
GWSHLCLISDGDTWFREPRIYGFFDQLIDDGFFEEFDNVVFYGAGPCGYAAAAYSVAAPGATVVAIQPQATLDPRMTEWD
DRFVEMRRTSFTDRYGYAPDMLDAAERGFVLYDPYQSLDAMHAALFARPNVTRLRLPCMGEAIQTRLIEMDILYRIMSLA
GSGRLTAEAFYRLARARRDNNVYLRNVLNRLDYLERPYLNILLCRNVNDRRRMPRFRRRLRDLERRAAEGEFRMPPGPAL
PPDPQHGDDGL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 37979; Mature: 37979

Theoretical pI: Translated: 4.72; Mature: 4.72

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQDDTDILEQDLSGLKPAEWQARLAEMAEENGMYQPLGERHFATFIDQGNTLLVTFESRQ
CCCHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCEEEEEECCCC
GIESFSETAQPLGFDLVKNLGWSHLCLISDGDTWFREPRIYGFFDQLIDDGFFEEFDNVV
CHHHHHHHHCCCCHHHHHHCCCCEEEEEECCCHHHHCCCHHHHHHHHHCCHHHHHHCCEE
FYGAGPCGYAAAAYSVAAPGATVVAIQPQATLDPRMTEWDDRFVEMRRTSFTDRYGYAPD
EECCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCHHCCCCCH
MLDAAERGFVLYDPYQSLDAMHAALFARPNVTRLRLPCMGEAIQTRLIEMDILYRIMSLA
HHHHHHCCEEEECCHHHHHHHHHHHHCCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHC
GSGRLTAEAFYRLARARRDNNVYLRNVLNRLDYLERPYLNILLCRNVNDRRRMPRFRRRL
CCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHH
RDLERRAAEGEFRMPPGPALPPDPQHGDDGL
HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MQDDTDILEQDLSGLKPAEWQARLAEMAEENGMYQPLGERHFATFIDQGNTLLVTFESRQ
CCCHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCEEEEEECCCC
GIESFSETAQPLGFDLVKNLGWSHLCLISDGDTWFREPRIYGFFDQLIDDGFFEEFDNVV
CHHHHHHHHCCCCHHHHHHCCCCEEEEEECCCHHHHCCCHHHHHHHHHCCHHHHHHCCEE
FYGAGPCGYAAAAYSVAAPGATVVAIQPQATLDPRMTEWDDRFVEMRRTSFTDRYGYAPD
EECCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCHHCCCCCH
MLDAAERGFVLYDPYQSLDAMHAALFARPNVTRLRLPCMGEAIQTRLIEMDILYRIMSLA
HHHHHHCCEEEECCHHHHHHHHHHHHCCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHC
GSGRLTAEAFYRLARARRDNNVYLRNVLNRLDYLERPYLNILLCRNVNDRRRMPRFRRRL
CCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHH
RDLERRAAEGEFRMPPGPALPPDPQHGDDGL
HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA