| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is 99081608
Identifier: 99081608
GI number: 99081608
Start: 1858406
End: 1859479
Strand: Reverse
Name: 99081608
Synonym: TM1040_1767
Alternate gene names: NA
Gene position: 1859479-1858406 (Counterclockwise)
Preceding gene: 99081609
Following gene: 99081607
Centisome position: 58.09
GC content: 64.53
Gene sequence:
>1074_bases ATGAAATTCGGACCCGTACCCTTGCGCGCGGCGCTGGGCACGATTGCGGCACATTCCATTCGCGCAGCCGCACGTCCCTA TGGCTCCGGGCGGGACTATAAGATTGCGAAAGGTACCGAACTGACCGCAGATCATATCGAGGATCTCAATGAGCTAGGGC ACCAAGAGATCATCGTCGCGCAGCTGGAGCCCGGTGATGTGCATGAAGATGCCGCGGCGCTGCGTTTGGCACAGGCTCTG GTGCCGGACCCCGAGGGTCAAGAGCTGCGTATCTCCGGTGCGGGCGCGGGGCGCGTCAATCTCTATGCGCGGGGCGCGGG GGTGGTGCGGCTTGATGCGGCGCAGGTTGCAGCGGTGAACGGGATAGATCCGATGATCACCGTGGCAACCGTGCCAGACT ATCACCGCGTCGATCCCGACAGTATGGTCGCCACGATCAAGATCATTTCTTATGCGGTGCCGGAGGCGCATCTCGCGCAG GCTGTAGTCGCTGCCAAGGCAGCCATTCGCGTGCTGGCGCCGGCCTTTGGCACCGCGACCCTGATCGAGACCCGCATCAC CGAAGAGATTCCATCCGACAAGGGCCGCGCGGCGATGGCGGGGCGGCTGGATCGGATGGGCATCACGCTGAGCCCGCGCG TGGTCAAGCCGCATCGAACGGCCGAGATCGCTTCCGCACTCCGGGACGCTCCGGGGGAGGTCCTCTTGGTGCTCACGGGC TCTGCGACCTCAGATCCGCAGGATGTCGCGCCCGAGGCGCTCCGGATGGCGGGAGGGGAGGTCACGCGCTTTGGGATGCC GGTTGATCCGGGTAATCTGCTGTTTCTTGGGTATCTGGGCGAAAAGCCCGTGATCGGCCTGCCGGGCTGCGCGCGATCGC CCGCGCTCAACGGAGCAGATTGGGTGCTGGAACGGGTGGTCTGTGGCCTAGATGTGACCTCGGCGGATATTGCGGCGATG GGGGTAGGGGGGCTTTTGAAAGAGATCCCAACCCGGCCAAGACCGCGCCGCAGCGCAGGCGGATCCGAACCGCGTCGCAT AAAATCCTCGCGCGATCTGCTGACCCGTGATTAA
Upstream 100 bases:
>100_bases TCCATGGCCCGGTCGGGTTGGACATCGGCGCCGCCAGCCCCTCGGAAATTGCGGTGTCGATCCTTGCCGAGATCACAGCA GTGCTGCGGGGCAAGGCGGA
Downstream 100 bases:
>100_bases CTGGGTTTAGCCAGATAAAAAGAATTCAAGCTAGGGAGGAATTTATGACGAAGGTCTCGATGACCGTGAATGGCAACCCC GTGTCCGGGAATGTCGAAGG
Product: molybdopterin binding domain-containing protein
Products: NA
Alternate protein names: 4-Diphosphocytidyl-2C-Methyl-D-Erythritol Synthase; Molybdopterin Biosynthesis; Molybdenum Cofactor Biosynthesis Protein; Molybdenum Cofactor Synthesis Domain Protein; Protein Family UPF; L-Seryl-TRNA(Ser) Selenium Transferase Protein; MobA-Like Protein-Like Protein; Formylmethanofuran Dehydrogenase Subunit E Region; 4-Diphosphocytidyl-2C-Methyl-D-Erythritolsynthas E; Molybdopterin Biosynthesis Protein MoeA; Molybdenum Cofactor Cytidylyltransferase; Transcriptional Regulator Fis Family
Number of amino acids: Translated: 357; Mature: 357
Protein sequence:
>357_residues MKFGPVPLRAALGTIAAHSIRAAARPYGSGRDYKIAKGTELTADHIEDLNELGHQEIIVAQLEPGDVHEDAAALRLAQAL VPDPEGQELRISGAGAGRVNLYARGAGVVRLDAAQVAAVNGIDPMITVATVPDYHRVDPDSMVATIKIISYAVPEAHLAQ AVVAAKAAIRVLAPAFGTATLIETRITEEIPSDKGRAAMAGRLDRMGITLSPRVVKPHRTAEIASALRDAPGEVLLVLTG SATSDPQDVAPEALRMAGGEVTRFGMPVDPGNLLFLGYLGEKPVIGLPGCARSPALNGADWVLERVVCGLDVTSADIAAM GVGGLLKEIPTRPRPRRSAGGSEPRRIKSSRDLLTRD
Sequences:
>Translated_357_residues MKFGPVPLRAALGTIAAHSIRAAARPYGSGRDYKIAKGTELTADHIEDLNELGHQEIIVAQLEPGDVHEDAAALRLAQAL VPDPEGQELRISGAGAGRVNLYARGAGVVRLDAAQVAAVNGIDPMITVATVPDYHRVDPDSMVATIKIISYAVPEAHLAQ AVVAAKAAIRVLAPAFGTATLIETRITEEIPSDKGRAAMAGRLDRMGITLSPRVVKPHRTAEIASALRDAPGEVLLVLTG SATSDPQDVAPEALRMAGGEVTRFGMPVDPGNLLFLGYLGEKPVIGLPGCARSPALNGADWVLERVVCGLDVTSADIAAM GVGGLLKEIPTRPRPRRSAGGSEPRRIKSSRDLLTRD >Mature_357_residues MKFGPVPLRAALGTIAAHSIRAAARPYGSGRDYKIAKGTELTADHIEDLNELGHQEIIVAQLEPGDVHEDAAALRLAQAL VPDPEGQELRISGAGAGRVNLYARGAGVVRLDAAQVAAVNGIDPMITVATVPDYHRVDPDSMVATIKIISYAVPEAHLAQ AVVAAKAAIRVLAPAFGTATLIETRITEEIPSDKGRAAMAGRLDRMGITLSPRVVKPHRTAEIASALRDAPGEVLLVLTG SATSDPQDVAPEALRMAGGEVTRFGMPVDPGNLLFLGYLGEKPVIGLPGCARSPALNGADWVLERVVCGLDVTSADIAAM GVGGLLKEIPTRPRPRRSAGGSEPRRIKSSRDLLTRD
Specific function: Unknown
COG id: COG0303
COG function: function code H; Molybdopterin biosynthesis enzyme
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 37421; Mature: 37421
Theoretical pI: Translated: 6.89; Mature: 6.89
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKFGPVPLRAALGTIAAHSIRAAARPYGSGRDYKIAKGTELTADHIEDLNELGHQEIIVA CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHCCCCEEEEE QLEPGDVHEDAAALRLAQALVPDPEGQELRISGAGAGRVNLYARGAGVVRLDAAQVAAVN ECCCCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCEEEEEECCCCEEEECHHHEEEEC GIDPMITVATVPDYHRVDPDSMVATIKIISYAVPEAHLAQAVVAAKAAIRVLAPAFGTAT CCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHH LIETRITEEIPSDKGRAAMAGRLDRMGITLSPRVVKPHRTAEIASALRDAPGEVLLVLTG HHHHHHHHHCCCCCCCCHHHCCHHHCCEEECCCEECCCHHHHHHHHHHCCCCCEEEEEEC SATSDPQDVAPEALRMAGGEVTRFGMPVDPGNLLFLGYLGEKPVIGLPGCARSPALNGAD CCCCCHHHHCHHHHHHCCCCEEECCCCCCCCCEEEEEECCCCCEEECCCCCCCCCCCCHH WVLERVVCGLDVTSADIAAMGVGGLLKEIPTRPRPRRSAGGSEPRRIKSSRDLLTRD HHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCC >Mature Secondary Structure MKFGPVPLRAALGTIAAHSIRAAARPYGSGRDYKIAKGTELTADHIEDLNELGHQEIIVA CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHCCCCEEEEE QLEPGDVHEDAAALRLAQALVPDPEGQELRISGAGAGRVNLYARGAGVVRLDAAQVAAVN ECCCCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCEEEEEECCCCEEEECHHHEEEEC GIDPMITVATVPDYHRVDPDSMVATIKIISYAVPEAHLAQAVVAAKAAIRVLAPAFGTAT CCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHH LIETRITEEIPSDKGRAAMAGRLDRMGITLSPRVVKPHRTAEIASALRDAPGEVLLVLTG HHHHHHHHHCCCCCCCCHHHCCHHHCCEEECCCEECCCHHHHHHHHHHCCCCCEEEEEEC SATSDPQDVAPEALRMAGGEVTRFGMPVDPGNLLFLGYLGEKPVIGLPGCARSPALNGAD CCCCCHHHHCHHHHHHCCCCEEECCCCCCCCCEEEEEECCCCCEEECCCCCCCCCCCCHH WVLERVVCGLDVTSADIAAMGVGGLLKEIPTRPRPRRSAGGSEPRRIKSSRDLLTRD HHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA