| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is 99081565
Identifier: 99081565
GI number: 99081565
Start: 1822482
End: 1823228
Strand: Direct
Name: 99081565
Synonym: TM1040_1724
Alternate gene names: NA
Gene position: 1822482-1823228 (Clockwise)
Preceding gene: 99081564
Following gene: 99081566
Centisome position: 56.94
GC content: 62.38
Gene sequence:
>747_bases ATGACACGCGAAGCGGAGTTCACCACGGCAATCCTCGACGCCCGTCTACCGGTACCGGACGGGTTGTTGGACGGTGCAGC GCGGCCCGCCGGGCGCCGCTTCAGCGTCTATCGCAACAATGTGGCCGTCTCCCTGACAGAGGCGCTGCATCAGGGATTTC CGGTCATCGCAAAGCTCCTCGGCAAGGAGAACATGGATGGATTGGCCGCACTTTTCCTGCGCGCCCACCCCCCCTCAAGC CCGCTGATGATGCACTATGGCGCTGAATTTCCGTGCTTTATCGAGGGCATGCCGCAGCTTTCGCATTTGGGGTATCTGGG GGATGTGGCCCGGCTGGAGTTGGCTCTGCGCCAGAGCTACCACGCCGCTGATGCCGCGCCGCTTGATCCAGCAAGGCTGG CCGCGCTCTCGTCCGAGGCTCTGATGCAAAGCCGGCTGACATTTGCTCCGGCAATGACAGTGCTGCGCTCGTCTTGGCCA ATCCACGCGATCTGGCGGTACAACACCGAGGATAGCGCCCCAAAGCCGCAACCGCAGGCCGAGGATGTTTTGATTACCCG ACCGGATTTTGACCCCATCGCCCAGCCGCTCCCCAAGGGCGGCGCTGTTTGGATTTCAGCCCTTCAGGCCGGCGAGACCC TCGGGGACGCCACCGAAGCCGCAACACATGATTTTCCCGAATTTGACCTCAGCGTCCCCCTGACGCTTTTGATCGAGGGC TTGGCCCTCACAGACCTCTCGCAATAG
Upstream 100 bases:
>100_bases CGCTGGTGGAATGGGACACGGATGTCCCCGAATGGTCGGTGCTCGAAGCCGAAGCAGCCCGCGCAGCGAACGCGCTGCGG ACGGCGAAAGTGGCCGCCTG
Downstream 100 bases:
>100_bases GACTTCCCATGACTGCGTTGATTTCTCTCCATAACGCCGTGTTCAACCTGGTTGAGCGCTTGGGCGACTGGCTGATGCCG CTATTTGCCCGTTTCACTTT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 248; Mature: 247
Protein sequence:
>248_residues MTREAEFTTAILDARLPVPDGLLDGAARPAGRRFSVYRNNVAVSLTEALHQGFPVIAKLLGKENMDGLAALFLRAHPPSS PLMMHYGAEFPCFIEGMPQLSHLGYLGDVARLELALRQSYHAADAAPLDPARLAALSSEALMQSRLTFAPAMTVLRSSWP IHAIWRYNTEDSAPKPQPQAEDVLITRPDFDPIAQPLPKGGAVWISALQAGETLGDATEAATHDFPEFDLSVPLTLLIEG LALTDLSQ
Sequences:
>Translated_248_residues MTREAEFTTAILDARLPVPDGLLDGAARPAGRRFSVYRNNVAVSLTEALHQGFPVIAKLLGKENMDGLAALFLRAHPPSS PLMMHYGAEFPCFIEGMPQLSHLGYLGDVARLELALRQSYHAADAAPLDPARLAALSSEALMQSRLTFAPAMTVLRSSWP IHAIWRYNTEDSAPKPQPQAEDVLITRPDFDPIAQPLPKGGAVWISALQAGETLGDATEAATHDFPEFDLSVPLTLLIEG LALTDLSQ >Mature_247_residues TREAEFTTAILDARLPVPDGLLDGAARPAGRRFSVYRNNVAVSLTEALHQGFPVIAKLLGKENMDGLAALFLRAHPPSSP LMMHYGAEFPCFIEGMPQLSHLGYLGDVARLELALRQSYHAADAAPLDPARLAALSSEALMQSRLTFAPAMTVLRSSWPI HAIWRYNTEDSAPKPQPQAEDVLITRPDFDPIAQPLPKGGAVWISALQAGETLGDATEAATHDFPEFDLSVPLTLLIEGL ALTDLSQ
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 26831; Mature: 26700
Theoretical pI: Translated: 4.79; Mature: 4.79
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTREAEFTTAILDARLPVPDGLLDGAARPAGRRFSVYRNNVAVSLTEALHQGFPVIAKLL CCCCHHHHHHHHHCCCCCCCCHHCCCCCCCCCEEEEECCCEEEEHHHHHHCCCHHHHHHH GKENMDGLAALFLRAHPPSSPLMMHYGAEFPCFIEGMPQLSHLGYLGDVARLELALRQSY CCCCCCHHHHHHHHCCCCCCCEEEECCCCCCEEECCCCHHHHHCHHHHHHHHHHHHHHHH HAADAAPLDPARLAALSSEALMQSRLTFAPAMTVLRSSWPIHAIWRYNTEDSAPKPQPQA CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCC EDVLITRPDFDPIAQPLPKGGAVWISALQAGETLGDATEAATHDFPEFDLSVPLTLLIEG CCEEEECCCCCHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCHHHHHHH LALTDLSQ HHHHCCCC >Mature Secondary Structure TREAEFTTAILDARLPVPDGLLDGAARPAGRRFSVYRNNVAVSLTEALHQGFPVIAKLL CCCHHHHHHHHHCCCCCCCCHHCCCCCCCCCEEEEECCCEEEEHHHHHHCCCHHHHHHH GKENMDGLAALFLRAHPPSSPLMMHYGAEFPCFIEGMPQLSHLGYLGDVARLELALRQSY CCCCCCHHHHHHHHCCCCCCCEEEECCCCCCEEECCCCHHHHHCHHHHHHHHHHHHHHHH HAADAAPLDPARLAALSSEALMQSRLTFAPAMTVLRSSWPIHAIWRYNTEDSAPKPQPQA CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCC EDVLITRPDFDPIAQPLPKGGAVWISALQAGETLGDATEAATHDFPEFDLSVPLTLLIEG CCEEEECCCCCHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCHHHHHHH LALTDLSQ HHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA