| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is 99081564
Identifier: 99081564
GI number: 99081564
Start: 1821631
End: 1822482
Strand: Direct
Name: 99081564
Synonym: TM1040_1723
Alternate gene names: NA
Gene position: 1821631-1822482 (Clockwise)
Preceding gene: 99081563
Following gene: 99081565
Centisome position: 56.91
GC content: 60.45
Gene sequence:
>852_bases ATGACCGATTTTTCCCAGCTGCCGAACGCCGCAGGTGTTGGCTATAAGCCTCAGCATTTCCAGAATATTATTGATGGCTC CGGGGCGGTGGACTGGCTTGAGATCCACGCCGAGAACTACATGGGCGACGGCGGTCGCCCGCTGGCGCAGCTGCGTCATC TCGCCGAGCGTTTCCCGATCTCCGTGCACGGTGTTGGGCTTTCCATTGGCGGCGAAGGACCGCTTGATCCGGAACACCTT GCGCGGCTCAAACATCTCGTGGACTGGCTGAAGCCCGCGAGCTTCTCCGAACATCTGGCGTGGTCCACCCACGACACGCA TTTCTACAACGATCTGCTGCCCCTGCCCTACACGGATGCCACGCTTGCGCGGATCTGCGATCACATCGACATGGTGCAGA CCCTGCTGGGGCGGCGTATGCTGCTGGAGAACCCCTCAAGCTATCTCGCCTTTGCCGAGAGCACATGGGAAGAGCCGGCC TTTTTGCACGAGATCGCCAAACGCACGGGCTGCGGGCTTTTGCTGGACGTGAACAACGTGTTTGTCTCCGCCACCAATCT TGGCTATCGCCCGCAGGACTATATTGATGCCTACCCGCTTGATCTGGTGGGAGAAATCCATCTTGGCGGGCATGATGAAG ACGAGGATGACCACGGTCGCCCGCTCCTTATCGACAGTCATGGCGCCGAAGTTGTCGACCCGGTTTGGTCCCTTTTGTCC TATACCCTCACCCGATCTGGCCCAAAGCCCACGCTGGTGGAATGGGACACGGATGTCCCCGAATGGTCGGTGCTCGAAGC CGAAGCAGCCCGCGCAGCGAACGCGCTGCGGACGGCGAAAGTGGCCGCCTGA
Upstream 100 bases:
>100_bases GCGCTGCGGCGCCCTTGCCTGTTGCCGATGCGCCGCAACGAGACGCGGCCTCTCCTACACCTTACCGCTCTTCGTTTTTA CGATCCCCACGAGGTCCGCT
Downstream 100 bases:
>100_bases TGACACGCGAAGCGGAGTTCACCACGGCAATCCTCGACGCCCGTCTACCGGTACCGGACGGGTTGTTGGACGGTGCAGCG CGGCCCGCCGGGCGCCGCTT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 283; Mature: 282
Protein sequence:
>283_residues MTDFSQLPNAAGVGYKPQHFQNIIDGSGAVDWLEIHAENYMGDGGRPLAQLRHLAERFPISVHGVGLSIGGEGPLDPEHL ARLKHLVDWLKPASFSEHLAWSTHDTHFYNDLLPLPYTDATLARICDHIDMVQTLLGRRMLLENPSSYLAFAESTWEEPA FLHEIAKRTGCGLLLDVNNVFVSATNLGYRPQDYIDAYPLDLVGEIHLGGHDEDEDDHGRPLLIDSHGAEVVDPVWSLLS YTLTRSGPKPTLVEWDTDVPEWSVLEAEAARAANALRTAKVAA
Sequences:
>Translated_283_residues MTDFSQLPNAAGVGYKPQHFQNIIDGSGAVDWLEIHAENYMGDGGRPLAQLRHLAERFPISVHGVGLSIGGEGPLDPEHL ARLKHLVDWLKPASFSEHLAWSTHDTHFYNDLLPLPYTDATLARICDHIDMVQTLLGRRMLLENPSSYLAFAESTWEEPA FLHEIAKRTGCGLLLDVNNVFVSATNLGYRPQDYIDAYPLDLVGEIHLGGHDEDEDDHGRPLLIDSHGAEVVDPVWSLLS YTLTRSGPKPTLVEWDTDVPEWSVLEAEAARAANALRTAKVAA >Mature_282_residues TDFSQLPNAAGVGYKPQHFQNIIDGSGAVDWLEIHAENYMGDGGRPLAQLRHLAERFPISVHGVGLSIGGEGPLDPEHLA RLKHLVDWLKPASFSEHLAWSTHDTHFYNDLLPLPYTDATLARICDHIDMVQTLLGRRMLLENPSSYLAFAESTWEEPAF LHEIAKRTGCGLLLDVNNVFVSATNLGYRPQDYIDAYPLDLVGEIHLGGHDEDEDDHGRPLLIDSHGAEVVDPVWSLLSY TLTRSGPKPTLVEWDTDVPEWSVLEAEAARAANALRTAKVAA
Specific function: Unknown
COG id: COG3220
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0276 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR007801 - InterPro: IPR013022 [H]
Pfam domain/function: PF05114 DUF692 [H]
EC number: NA
Molecular weight: Translated: 31299; Mature: 31168
Theoretical pI: Translated: 4.62; Mature: 4.62
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTDFSQLPNAAGVGYKPQHFQNIIDGSGAVDWLEIHAENYMGDGGRPLAQLRHLAERFPI CCCHHHCCCCCCCCCCHHHHHHHHCCCCCEEHEEEEHHHHCCCCCCHHHHHHHHHHHCCE SVHGVGLSIGGEGPLDPEHLARLKHLVDWLKPASFSEHLAWSTHDTHFYNDLLPLPYTDA EEEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCHHHHCCCCCCCCHH TLARICDHIDMVQTLLGRRMLLENPSSYLAFAESTWEEPAFLHEIAKRTGCGLLLDVNNV HHHHHHHHHHHHHHHHCCHHHHCCCCHHEEEHHHCCCCHHHHHHHHHHCCCEEEEECCCE FVSATNLGYRPQDYIDAYPLDLVGEIHLGGHDEDEDDHGRPLLIDSHGAEVVDPVWSLLS EEEECCCCCCCHHHHCCCCHHHEEEEEECCCCCCCCCCCCEEEEECCCCHHHHHHHHHHH YTLTRSGPKPTLVEWDTDVPEWSVLEAEAARAANALRTAKVAA HHHHCCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure TDFSQLPNAAGVGYKPQHFQNIIDGSGAVDWLEIHAENYMGDGGRPLAQLRHLAERFPI CCHHHCCCCCCCCCCHHHHHHHHCCCCCEEHEEEEHHHHCCCCCCHHHHHHHHHHHCCE SVHGVGLSIGGEGPLDPEHLARLKHLVDWLKPASFSEHLAWSTHDTHFYNDLLPLPYTDA EEEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCHHHHCCCCCCCCHH TLARICDHIDMVQTLLGRRMLLENPSSYLAFAESTWEEPAFLHEIAKRTGCGLLLDVNNV HHHHHHHHHHHHHHHHCCHHHHCCCCHHEEEHHHCCCCHHHHHHHHHHCCCEEEEECCCE FVSATNLGYRPQDYIDAYPLDLVGEIHLGGHDEDEDDHGRPLLIDSHGAEVVDPVWSLLS EEEECCCCCCCHHHHCCCCHHHEEEEEECCCCCCCCCCCCEEEEECCCCHHHHHHHHHHH YTLTRSGPKPTLVEWDTDVPEWSVLEAEAARAANALRTAKVAA HHHHCCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA