Definition Ruegeria sp. TM1040, complete genome.
Accession NC_008044
Length 3,200,938

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The map label for this gene is 99081564

Identifier: 99081564

GI number: 99081564

Start: 1821631

End: 1822482

Strand: Direct

Name: 99081564

Synonym: TM1040_1723

Alternate gene names: NA

Gene position: 1821631-1822482 (Clockwise)

Preceding gene: 99081563

Following gene: 99081565

Centisome position: 56.91

GC content: 60.45

Gene sequence:

>852_bases
ATGACCGATTTTTCCCAGCTGCCGAACGCCGCAGGTGTTGGCTATAAGCCTCAGCATTTCCAGAATATTATTGATGGCTC
CGGGGCGGTGGACTGGCTTGAGATCCACGCCGAGAACTACATGGGCGACGGCGGTCGCCCGCTGGCGCAGCTGCGTCATC
TCGCCGAGCGTTTCCCGATCTCCGTGCACGGTGTTGGGCTTTCCATTGGCGGCGAAGGACCGCTTGATCCGGAACACCTT
GCGCGGCTCAAACATCTCGTGGACTGGCTGAAGCCCGCGAGCTTCTCCGAACATCTGGCGTGGTCCACCCACGACACGCA
TTTCTACAACGATCTGCTGCCCCTGCCCTACACGGATGCCACGCTTGCGCGGATCTGCGATCACATCGACATGGTGCAGA
CCCTGCTGGGGCGGCGTATGCTGCTGGAGAACCCCTCAAGCTATCTCGCCTTTGCCGAGAGCACATGGGAAGAGCCGGCC
TTTTTGCACGAGATCGCCAAACGCACGGGCTGCGGGCTTTTGCTGGACGTGAACAACGTGTTTGTCTCCGCCACCAATCT
TGGCTATCGCCCGCAGGACTATATTGATGCCTACCCGCTTGATCTGGTGGGAGAAATCCATCTTGGCGGGCATGATGAAG
ACGAGGATGACCACGGTCGCCCGCTCCTTATCGACAGTCATGGCGCCGAAGTTGTCGACCCGGTTTGGTCCCTTTTGTCC
TATACCCTCACCCGATCTGGCCCAAAGCCCACGCTGGTGGAATGGGACACGGATGTCCCCGAATGGTCGGTGCTCGAAGC
CGAAGCAGCCCGCGCAGCGAACGCGCTGCGGACGGCGAAAGTGGCCGCCTGA

Upstream 100 bases:

>100_bases
GCGCTGCGGCGCCCTTGCCTGTTGCCGATGCGCCGCAACGAGACGCGGCCTCTCCTACACCTTACCGCTCTTCGTTTTTA
CGATCCCCACGAGGTCCGCT

Downstream 100 bases:

>100_bases
TGACACGCGAAGCGGAGTTCACCACGGCAATCCTCGACGCCCGTCTACCGGTACCGGACGGGTTGTTGGACGGTGCAGCG
CGGCCCGCCGGGCGCCGCTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 283; Mature: 282

Protein sequence:

>283_residues
MTDFSQLPNAAGVGYKPQHFQNIIDGSGAVDWLEIHAENYMGDGGRPLAQLRHLAERFPISVHGVGLSIGGEGPLDPEHL
ARLKHLVDWLKPASFSEHLAWSTHDTHFYNDLLPLPYTDATLARICDHIDMVQTLLGRRMLLENPSSYLAFAESTWEEPA
FLHEIAKRTGCGLLLDVNNVFVSATNLGYRPQDYIDAYPLDLVGEIHLGGHDEDEDDHGRPLLIDSHGAEVVDPVWSLLS
YTLTRSGPKPTLVEWDTDVPEWSVLEAEAARAANALRTAKVAA

Sequences:

>Translated_283_residues
MTDFSQLPNAAGVGYKPQHFQNIIDGSGAVDWLEIHAENYMGDGGRPLAQLRHLAERFPISVHGVGLSIGGEGPLDPEHL
ARLKHLVDWLKPASFSEHLAWSTHDTHFYNDLLPLPYTDATLARICDHIDMVQTLLGRRMLLENPSSYLAFAESTWEEPA
FLHEIAKRTGCGLLLDVNNVFVSATNLGYRPQDYIDAYPLDLVGEIHLGGHDEDEDDHGRPLLIDSHGAEVVDPVWSLLS
YTLTRSGPKPTLVEWDTDVPEWSVLEAEAARAANALRTAKVAA
>Mature_282_residues
TDFSQLPNAAGVGYKPQHFQNIIDGSGAVDWLEIHAENYMGDGGRPLAQLRHLAERFPISVHGVGLSIGGEGPLDPEHLA
RLKHLVDWLKPASFSEHLAWSTHDTHFYNDLLPLPYTDATLARICDHIDMVQTLLGRRMLLENPSSYLAFAESTWEEPAF
LHEIAKRTGCGLLLDVNNVFVSATNLGYRPQDYIDAYPLDLVGEIHLGGHDEDEDDHGRPLLIDSHGAEVVDPVWSLLSY
TLTRSGPKPTLVEWDTDVPEWSVLEAEAARAANALRTAKVAA

Specific function: Unknown

COG id: COG3220

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0276 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007801
- InterPro:   IPR013022 [H]

Pfam domain/function: PF05114 DUF692 [H]

EC number: NA

Molecular weight: Translated: 31299; Mature: 31168

Theoretical pI: Translated: 4.62; Mature: 4.62

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDFSQLPNAAGVGYKPQHFQNIIDGSGAVDWLEIHAENYMGDGGRPLAQLRHLAERFPI
CCCHHHCCCCCCCCCCHHHHHHHHCCCCCEEHEEEEHHHHCCCCCCHHHHHHHHHHHCCE
SVHGVGLSIGGEGPLDPEHLARLKHLVDWLKPASFSEHLAWSTHDTHFYNDLLPLPYTDA
EEEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCHHHHCCCCCCCCHH
TLARICDHIDMVQTLLGRRMLLENPSSYLAFAESTWEEPAFLHEIAKRTGCGLLLDVNNV
HHHHHHHHHHHHHHHHCCHHHHCCCCHHEEEHHHCCCCHHHHHHHHHHCCCEEEEECCCE
FVSATNLGYRPQDYIDAYPLDLVGEIHLGGHDEDEDDHGRPLLIDSHGAEVVDPVWSLLS
EEEECCCCCCCHHHHCCCCHHHEEEEEECCCCCCCCCCCCEEEEECCCCHHHHHHHHHHH
YTLTRSGPKPTLVEWDTDVPEWSVLEAEAARAANALRTAKVAA
HHHHCCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
TDFSQLPNAAGVGYKPQHFQNIIDGSGAVDWLEIHAENYMGDGGRPLAQLRHLAERFPI
CCHHHCCCCCCCCCCHHHHHHHHCCCCCEEHEEEEHHHHCCCCCCHHHHHHHHHHHCCE
SVHGVGLSIGGEGPLDPEHLARLKHLVDWLKPASFSEHLAWSTHDTHFYNDLLPLPYTDA
EEEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCHHHHCCCCCCCCHH
TLARICDHIDMVQTLLGRRMLLENPSSYLAFAESTWEEPAFLHEIAKRTGCGLLLDVNNV
HHHHHHHHHHHHHHHHCCHHHHCCCCHHEEEHHHCCCCHHHHHHHHHHCCCEEEEECCCE
FVSATNLGYRPQDYIDAYPLDLVGEIHLGGHDEDEDDHGRPLLIDSHGAEVVDPVWSLLS
EEEECCCCCCCHHHHCCCCHHHEEEEEECCCCCCCCCCCCEEEEECCCCHHHHHHHHHHH
YTLTRSGPKPTLVEWDTDVPEWSVLEAEAARAANALRTAKVAA
HHHHCCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA