Definition Ruegeria sp. TM1040, complete genome.
Accession NC_008044
Length 3,200,938

Click here to switch to the map view.

The map label for this gene is 99081565

Identifier: 99081565

GI number: 99081565

Start: 1822482

End: 1823228

Strand: Direct

Name: 99081565

Synonym: TM1040_1724

Alternate gene names: NA

Gene position: 1822482-1823228 (Clockwise)

Preceding gene: 99081564

Following gene: 99081566

Centisome position: 56.94

GC content: 62.38

Gene sequence:

>747_bases
ATGACACGCGAAGCGGAGTTCACCACGGCAATCCTCGACGCCCGTCTACCGGTACCGGACGGGTTGTTGGACGGTGCAGC
GCGGCCCGCCGGGCGCCGCTTCAGCGTCTATCGCAACAATGTGGCCGTCTCCCTGACAGAGGCGCTGCATCAGGGATTTC
CGGTCATCGCAAAGCTCCTCGGCAAGGAGAACATGGATGGATTGGCCGCACTTTTCCTGCGCGCCCACCCCCCCTCAAGC
CCGCTGATGATGCACTATGGCGCTGAATTTCCGTGCTTTATCGAGGGCATGCCGCAGCTTTCGCATTTGGGGTATCTGGG
GGATGTGGCCCGGCTGGAGTTGGCTCTGCGCCAGAGCTACCACGCCGCTGATGCCGCGCCGCTTGATCCAGCAAGGCTGG
CCGCGCTCTCGTCCGAGGCTCTGATGCAAAGCCGGCTGACATTTGCTCCGGCAATGACAGTGCTGCGCTCGTCTTGGCCA
ATCCACGCGATCTGGCGGTACAACACCGAGGATAGCGCCCCAAAGCCGCAACCGCAGGCCGAGGATGTTTTGATTACCCG
ACCGGATTTTGACCCCATCGCCCAGCCGCTCCCCAAGGGCGGCGCTGTTTGGATTTCAGCCCTTCAGGCCGGCGAGACCC
TCGGGGACGCCACCGAAGCCGCAACACATGATTTTCCCGAATTTGACCTCAGCGTCCCCCTGACGCTTTTGATCGAGGGC
TTGGCCCTCACAGACCTCTCGCAATAG

Upstream 100 bases:

>100_bases
CGCTGGTGGAATGGGACACGGATGTCCCCGAATGGTCGGTGCTCGAAGCCGAAGCAGCCCGCGCAGCGAACGCGCTGCGG
ACGGCGAAAGTGGCCGCCTG

Downstream 100 bases:

>100_bases
GACTTCCCATGACTGCGTTGATTTCTCTCCATAACGCCGTGTTCAACCTGGTTGAGCGCTTGGGCGACTGGCTGATGCCG
CTATTTGCCCGTTTCACTTT

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 248; Mature: 247

Protein sequence:

>248_residues
MTREAEFTTAILDARLPVPDGLLDGAARPAGRRFSVYRNNVAVSLTEALHQGFPVIAKLLGKENMDGLAALFLRAHPPSS
PLMMHYGAEFPCFIEGMPQLSHLGYLGDVARLELALRQSYHAADAAPLDPARLAALSSEALMQSRLTFAPAMTVLRSSWP
IHAIWRYNTEDSAPKPQPQAEDVLITRPDFDPIAQPLPKGGAVWISALQAGETLGDATEAATHDFPEFDLSVPLTLLIEG
LALTDLSQ

Sequences:

>Translated_248_residues
MTREAEFTTAILDARLPVPDGLLDGAARPAGRRFSVYRNNVAVSLTEALHQGFPVIAKLLGKENMDGLAALFLRAHPPSS
PLMMHYGAEFPCFIEGMPQLSHLGYLGDVARLELALRQSYHAADAAPLDPARLAALSSEALMQSRLTFAPAMTVLRSSWP
IHAIWRYNTEDSAPKPQPQAEDVLITRPDFDPIAQPLPKGGAVWISALQAGETLGDATEAATHDFPEFDLSVPLTLLIEG
LALTDLSQ
>Mature_247_residues
TREAEFTTAILDARLPVPDGLLDGAARPAGRRFSVYRNNVAVSLTEALHQGFPVIAKLLGKENMDGLAALFLRAHPPSSP
LMMHYGAEFPCFIEGMPQLSHLGYLGDVARLELALRQSYHAADAAPLDPARLAALSSEALMQSRLTFAPAMTVLRSSWPI
HAIWRYNTEDSAPKPQPQAEDVLITRPDFDPIAQPLPKGGAVWISALQAGETLGDATEAATHDFPEFDLSVPLTLLIEGL
ALTDLSQ

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 26831; Mature: 26700

Theoretical pI: Translated: 4.79; Mature: 4.79

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTREAEFTTAILDARLPVPDGLLDGAARPAGRRFSVYRNNVAVSLTEALHQGFPVIAKLL
CCCCHHHHHHHHHCCCCCCCCHHCCCCCCCCCEEEEECCCEEEEHHHHHHCCCHHHHHHH
GKENMDGLAALFLRAHPPSSPLMMHYGAEFPCFIEGMPQLSHLGYLGDVARLELALRQSY
CCCCCCHHHHHHHHCCCCCCCEEEECCCCCCEEECCCCHHHHHCHHHHHHHHHHHHHHHH
HAADAAPLDPARLAALSSEALMQSRLTFAPAMTVLRSSWPIHAIWRYNTEDSAPKPQPQA
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCC
EDVLITRPDFDPIAQPLPKGGAVWISALQAGETLGDATEAATHDFPEFDLSVPLTLLIEG
CCEEEECCCCCHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCHHHHHHH
LALTDLSQ
HHHHCCCC
>Mature Secondary Structure 
TREAEFTTAILDARLPVPDGLLDGAARPAGRRFSVYRNNVAVSLTEALHQGFPVIAKLL
CCCHHHHHHHHHCCCCCCCCHHCCCCCCCCCEEEEECCCEEEEHHHHHHCCCHHHHHHH
GKENMDGLAALFLRAHPPSSPLMMHYGAEFPCFIEGMPQLSHLGYLGDVARLELALRQSY
CCCCCCHHHHHHHHCCCCCCCEEEECCCCCCEEECCCCHHHHHCHHHHHHHHHHHHHHHH
HAADAAPLDPARLAALSSEALMQSRLTFAPAMTVLRSSWPIHAIWRYNTEDSAPKPQPQA
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCC
EDVLITRPDFDPIAQPLPKGGAVWISALQAGETLGDATEAATHDFPEFDLSVPLTLLIEG
CCEEEECCCCCHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCHHHHHHH
LALTDLSQ
HHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA