| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is hisM [H]
Identifier: 99081555
GI number: 99081555
Start: 1811789
End: 1812595
Strand: Direct
Name: hisM [H]
Synonym: TM1040_1714
Alternate gene names: 99081555
Gene position: 1811789-1812595 (Clockwise)
Preceding gene: 99081554
Following gene: 99081557
Centisome position: 56.6
GC content: 58.74
Gene sequence:
>807_bases ATGAGCTGCTTTGAAACCTTTCAGGCCTATGCGCTGCGCTCAATCGGGATTGGCGAACGGTTGCTGCCGCGCAGTGACTT TACGCTCTGCGATCAATTTGTCCTGATCGGTTCCGGCCTGATCTGGAACGTCTACTTCGGCGCGATTGCGATTTTCACCG GGTTCTTCTTTGCCAATGCCCTCGCGGTGGCGAAGAACTCCCACAAGCGCTGGCTGCGCGCACCGGCAAACGGGTTCATC TTTGTGTTCCGGGGCTCGCCGCTGTTCATCCAGTTCTTCTTTGCCTATTTCGTGTTCCTGTCGCTCAAGAGTGTTTCACC GATCTTTGATCCGCTCTCGGCGGCCTGGCTTGGTGCGCTGATCGTGCTGTTCCTCAATACCTCGGCCTATTCGGCAGAGA TCTTCTACGGCGCGCTGCGCTCGATCCCCAAAGGCGACCTCGAAGCCGCCGACGCCTATGGTCTGTCGGGCTGGAGCCGC TTTCGCAGGGTGATCTGGCCCACCATGATGCGGCTGGCCTGGCCCGCCTATACCAACGAGGCGATCTTTCTGTTCCACGC CACGACACTGGTCTATTTCTCGGGCTTTCCGGCGTGGCGCCAAAAGGGCGATGCGCTGTATTACGCGAACTACTTCGCGG ATAAGACCTTCAACCCGTTCGTCCCCTACCCGATCCTTGCGTTCTATTTCATCCTGCTGACGCTGGCGATCATCGCGGTG TTTGGAATGATCAACACGCGGCTCAACCGGCATATGCCACAGGAGCTGCGCCGCAAGATCCGGGTGCGCCCGCAGCTGAT GCGCTAA
Upstream 100 bases:
>100_bases AGGTCTCTGAAATCGTCCTGGCCCGTATTTCCCGCCGCCTGTCCCATGGGCAGGCCACCCTCGCCGGCGAAGCCCAACGC AAAGCCGAAGGAGCCGCAAC
Downstream 100 bases:
>100_bases GGGCGCGACACCCGCAAAGAAAAAACGCCCCGCTGATCAGATCAGCGGGGCGTTTTCTTATCCACGCGCCTTGGCACGCA CATAGTTGCCCGGCGCCTGT
Product: amino acid ABC transporter permease
Products: ADP; phosphate; L-histidine [Cytoplasm]; ADP; L-ornithine [Cytoplasm]; L-arginine [Cytoplasm]; L-lysine [Cytoplasm] [C]
Alternate protein names: NA
Number of amino acids: Translated: 268; Mature: 267
Protein sequence:
>268_residues MSCFETFQAYALRSIGIGERLLPRSDFTLCDQFVLIGSGLIWNVYFGAIAIFTGFFFANALAVAKNSHKRWLRAPANGFI FVFRGSPLFIQFFFAYFVFLSLKSVSPIFDPLSAAWLGALIVLFLNTSAYSAEIFYGALRSIPKGDLEAADAYGLSGWSR FRRVIWPTMMRLAWPAYTNEAIFLFHATTLVYFSGFPAWRQKGDALYYANYFADKTFNPFVPYPILAFYFILLTLAIIAV FGMINTRLNRHMPQELRRKIRVRPQLMR
Sequences:
>Translated_268_residues MSCFETFQAYALRSIGIGERLLPRSDFTLCDQFVLIGSGLIWNVYFGAIAIFTGFFFANALAVAKNSHKRWLRAPANGFI FVFRGSPLFIQFFFAYFVFLSLKSVSPIFDPLSAAWLGALIVLFLNTSAYSAEIFYGALRSIPKGDLEAADAYGLSGWSR FRRVIWPTMMRLAWPAYTNEAIFLFHATTLVYFSGFPAWRQKGDALYYANYFADKTFNPFVPYPILAFYFILLTLAIIAV FGMINTRLNRHMPQELRRKIRVRPQLMR >Mature_267_residues SCFETFQAYALRSIGIGERLLPRSDFTLCDQFVLIGSGLIWNVYFGAIAIFTGFFFANALAVAKNSHKRWLRAPANGFIF VFRGSPLFIQFFFAYFVFLSLKSVSPIFDPLSAAWLGALIVLFLNTSAYSAEIFYGALRSIPKGDLEAADAYGLSGWSRF RRVIWPTMMRLAWPAYTNEAIFLFHATTLVYFSGFPAWRQKGDALYYANYFADKTFNPFVPYPILAFYFILLTLAIIAVF GMINTRLNRHMPQELRRKIRVRPQLMR
Specific function: Part of the binding-protein-dependent transport system for histidine; probably responsible for the translocation of the substrate across the membrane [H]
COG id: COG4160
COG function: function code E; ABC-type arginine/histidine transport system, permease component
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transmembrane type-1 domain [H]
Homologues:
Organism=Escherichia coli, GI1788645, Length=219, Percent_Identity=31.5068493150685, Blast_Score=114, Evalue=5e-27, Organism=Escherichia coli, GI1788226, Length=222, Percent_Identity=30.1801801801802, Blast_Score=82, Evalue=3e-17, Organism=Escherichia coli, GI1787086, Length=120, Percent_Identity=35, Blast_Score=82, Evalue=3e-17, Organism=Escherichia coli, GI1787030, Length=174, Percent_Identity=32.7586206896552, Blast_Score=76, Evalue=2e-15, Organism=Escherichia coli, GI87082239, Length=159, Percent_Identity=30.188679245283, Blast_Score=66, Evalue=3e-12, Organism=Escherichia coli, GI1788646, Length=167, Percent_Identity=29.3413173652695, Blast_Score=65, Evalue=6e-12, Organism=Escherichia coli, GI1787087, Length=239, Percent_Identity=25.1046025104602, Blast_Score=62, Evalue=3e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR010065 - InterPro: IPR000515 [H]
Pfam domain/function: PF00528 BPD_transp_1 [H]
EC number: NA
Molecular weight: Translated: 30741; Mature: 30610
Theoretical pI: Translated: 10.33; Mature: 10.33
Prosite motif: PS50928 ABC_TM1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSCFETFQAYALRSIGIGERLLPRSDFTLCDQFVLIGSGLIWNVYFGAIAIFTGFFFANA CCHHHHHHHHHHHHCCCCCHHCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH LAVAKNSHKRWLRAPANGFIFVFRGSPLFIQFFFAYFVFLSLKSVSPIFDPLSAAWLGAL HHHHHCCHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH IVLFLNTSAYSAEIFYGALRSIPKGDLEAADAYGLSGWSRFRRVIWPTMMRLAWPAYTNE HHHHHCCCCHHHHHHHHHHHCCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCC AIFLFHATTLVYFSGFPAWRQKGDALYYANYFADKTFNPFVPYPILAFYFILLTLAIIAV EEEEEEHHHHHHHCCCHHHHHCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHH FGMINTRLNRHMPQELRRKIRVRPQLMR HHHHHHHHHHCCCHHHHHHHCCCCCCCC >Mature Secondary Structure SCFETFQAYALRSIGIGERLLPRSDFTLCDQFVLIGSGLIWNVYFGAIAIFTGFFFANA CHHHHHHHHHHHHCCCCCHHCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH LAVAKNSHKRWLRAPANGFIFVFRGSPLFIQFFFAYFVFLSLKSVSPIFDPLSAAWLGAL HHHHHCCHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH IVLFLNTSAYSAEIFYGALRSIPKGDLEAADAYGLSGWSRFRRVIWPTMMRLAWPAYTNE HHHHHCCCCHHHHHHHHHHHCCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCC AIFLFHATTLVYFSGFPAWRQKGDALYYANYFADKTFNPFVPYPILAFYFILLTLAIIAV EEEEEEHHHHHHHCCCHHHHHCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHH FGMINTRLNRHMPQELRRKIRVRPQLMR HHHHHHHHHHCCCHHHHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; L-histidine [Periplasm]; H2O; ATP; L-ornithine [Periplasm]; L-arginine [Periplasm]; L-lysine [Periplasm] [C]
Specific reaction: ATP + L-histidine [Periplasm] + H2O = ADP + phosphate + L-histidine [Cytoplasm] ATP + L-ornithine [Periplasm] + H2O = ADP + phosphate + L-ornithine [Cytoplasm] ATP + L-arginine [Periplasm] + H2O = ADP + phosphate + L-arginine [Cytoplasm] ATP + L-lysine [P
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]