Click here to switch to the map view.

The map label for this gene is 99081557

Identifier: 99081557

GI number: 99081557

Start: 1814631

End: 1815902

Strand: Direct

Name: 99081557

Synonym: TM1040_1716

Alternate gene names: NA

Gene position: 1814631-1815902 (Clockwise)

Preceding gene: 99081555

Following gene: 99081558

Centisome position: 56.69

GC content: 59.12

Gene sequence:

>1272_bases
ATGCGCTACATGATGTCCTACGACCTGATGGAGACGGTTCGTAACGCGAACCAATGGCTTGGCGCAACCGCGCTGTCCAT
GGCCTCCTATCCGGCCAATGCCGCCCTGCCGAACCCGATGCTGAGCTGGATGGCCGCATGGGGTCAGGTCACAGAACGCA
GTTTCGAGCGGATGGTGACCAAGCCCGACTGGGGCATCCCGGCAACCACCCTGCCTGATGGTAAGGACCATCTGGTCGAA
GTCGACACAATCGTCGAAAAACCGTTTGGGGATCTCATTCATTTCCGGGTCACCGATCGCGCTGAACAGCCGCGCAAGGT
TCTGGTGGTGGCGCCGATGTCCGGCCATTACGCCACGCTCCTGCGCTCCATGGTCAAAAGCTTGATCGAGAACTGCGAAG
TCTATGTGACAGACTGGCACAACGCCCGCGACATTCCCGTCTCGGCCGGGAAATTCGATGTCGAGGATTACACGCTCTAT
CTGGTTGAGTTCATGCGCGAACTTGGCCCTGACACCCATGTGGTTGCCGTCTGTCAGCCGGCGCCGCTCACCCTGGCGGC
GACCGCCTATCTCGCAGAGATCGACCCCAAGGCGCAGCCGTCTTCGCTGACCCTGATCGGCGGTCCCGTGGACCCTGACG
CCACGCCCACCGATGTGACCGATTTTGGCCGCCGCGTGACCATGGGACAGCTGGAGCAGACCATGATCCAGCGCGTTGGC
TTCAAATACAAAGGGGTCGGTCGCAAGGTCTATCCCGGGCTGTTGCAGCTGGCTTCATTTATGTCGATGAACATGGACCG
CCACTCCAAGGCCTTTTCCGAGCAGATCATGCGCGTCTGCCGCGGCGAGGCCACGGATCACGATGCCCACAACCGCTTTT
ACGACGAGTATCTTGCAGTGATGGACATGCCGGCAGAGTTCTATCTCTCGACGGTAGAGCGTGTCTTCAAACAGCGCGAA
ATCGCCCAAAACGCCTTTACCGTCCAAGGTCACAAGATCGACATCGGCAAGATCACGGATGTCGCGGTGAAAACCGTTGA
AGGCTCCAAGGACGATATTTCCGCGCCCGGTCAATGCATTGCAGCGCTGGACCTCTGCACCGGCCTGCCCGACTCGAAAA
AGGCAAGCCATGTAGAACCCGGTGCCGGGCACTATGGCATCTTTGCCGGTCGTTCCTGGCGCAACAACATCCGTCCGCTT
GTGATAGATTTCATGGATGCCAACGCGCGCCAACCTGTGCGCAAACAGCCCAAGAAAACCGCAGCCAAATAG

Upstream 100 bases:

>100_bases
CCATTCTACGGCAAAGCGGCCTCAGCTCCCAATCTCCCGGCGTGCGTCGGCAAAGATGGGCTCAAACCGCGGCACGAAAA
GCACCGCCAAGGAGACGCAC

Downstream 100 bases:

>100_bases
AGGGCATTTTCATGTCTGACGCCCCCTCGGAACCGCTTGGGTTTTCCTGTGCCTGTGGCGCGCTCTCCGGTCACATCGAG
GCGGCCTCAGTCAAGCAAGG

Product: polyhydroxyalkanoate depolymerase, intracellular

Products: NA

Alternate protein names: Intracellular PHB Depolymerase; Polyhydroxyalkanoate Depolymerase; Poly-Beta-Hydroxyalkanoate Depolymerase; PHB Depolymerase; Poly[D(-)-3-Hydroxybutyrate] Depolymerase; Intracellular Poly(3-Hydroxybutyrate) Depolymerase; Intracellular Polyhydroxyalkanoate Depolymerase; Polyhydroxyalkanoate Depolymerase Intracellular Subfamily; Poly(3-Hydroxyalkanoate) Depolymerase; PHB De-Polymerase Domain-Containing Protein; Poly(3-Hydroxybutyrate) Depolymerase; Intracellular PHB Depolymerase Protein; Poly-Beta-Hydroxyalkanoate Depolymerase-Like Protein; Intracellular Poly[D(-)-3-Hydroxybutyrate] Depolymerase; Poly[D(-)-3-Hydroxybutyrate](Phb) Depolymerase; Poly-Beta-Hydroxyalkanoate/Butyrate Depolymerase; Poly-Beta-Hydroxyalkanoate Depolymerase Protein; Poly[D(-)-3-Hydroxyalkanoate] Depolymerase; Polyhydroxybutanoate Depolymerase; Poly-Beta-Hydroxybutyrate Depolymerase

Number of amino acids: Translated: 423; Mature: 423

Protein sequence:

>423_residues
MRYMMSYDLMETVRNANQWLGATALSMASYPANAALPNPMLSWMAAWGQVTERSFERMVTKPDWGIPATTLPDGKDHLVE
VDTIVEKPFGDLIHFRVTDRAEQPRKVLVVAPMSGHYATLLRSMVKSLIENCEVYVTDWHNARDIPVSAGKFDVEDYTLY
LVEFMRELGPDTHVVAVCQPAPLTLAATAYLAEIDPKAQPSSLTLIGGPVDPDATPTDVTDFGRRVTMGQLEQTMIQRVG
FKYKGVGRKVYPGLLQLASFMSMNMDRHSKAFSEQIMRVCRGEATDHDAHNRFYDEYLAVMDMPAEFYLSTVERVFKQRE
IAQNAFTVQGHKIDIGKITDVAVKTVEGSKDDISAPGQCIAALDLCTGLPDSKKASHVEPGAGHYGIFAGRSWRNNIRPL
VIDFMDANARQPVRKQPKKTAAK

Sequences:

>Translated_423_residues
MRYMMSYDLMETVRNANQWLGATALSMASYPANAALPNPMLSWMAAWGQVTERSFERMVTKPDWGIPATTLPDGKDHLVE
VDTIVEKPFGDLIHFRVTDRAEQPRKVLVVAPMSGHYATLLRSMVKSLIENCEVYVTDWHNARDIPVSAGKFDVEDYTLY
LVEFMRELGPDTHVVAVCQPAPLTLAATAYLAEIDPKAQPSSLTLIGGPVDPDATPTDVTDFGRRVTMGQLEQTMIQRVG
FKYKGVGRKVYPGLLQLASFMSMNMDRHSKAFSEQIMRVCRGEATDHDAHNRFYDEYLAVMDMPAEFYLSTVERVFKQRE
IAQNAFTVQGHKIDIGKITDVAVKTVEGSKDDISAPGQCIAALDLCTGLPDSKKASHVEPGAGHYGIFAGRSWRNNIRPL
VIDFMDANARQPVRKQPKKTAAK
>Mature_423_residues
MRYMMSYDLMETVRNANQWLGATALSMASYPANAALPNPMLSWMAAWGQVTERSFERMVTKPDWGIPATTLPDGKDHLVE
VDTIVEKPFGDLIHFRVTDRAEQPRKVLVVAPMSGHYATLLRSMVKSLIENCEVYVTDWHNARDIPVSAGKFDVEDYTLY
LVEFMRELGPDTHVVAVCQPAPLTLAATAYLAEIDPKAQPSSLTLIGGPVDPDATPTDVTDFGRRVTMGQLEQTMIQRVG
FKYKGVGRKVYPGLLQLASFMSMNMDRHSKAFSEQIMRVCRGEATDHDAHNRFYDEYLAVMDMPAEFYLSTVERVFKQRE
IAQNAFTVQGHKIDIGKITDVAVKTVEGSKDDISAPGQCIAALDLCTGLPDSKKASHVEPGAGHYGIFAGRSWRNNIRPL
VIDFMDANARQPVRKQPKKTAAK

Specific function: Unknown

COG id: COG4553

COG function: function code I; Poly-beta-hydroxyalkanoate depolymerase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 47137; Mature: 47137

Theoretical pI: Translated: 6.74; Mature: 6.74

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
4.7 %Met     (Translated Protein)
5.9 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
4.7 %Met     (Mature Protein)
5.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRYMMSYDLMETVRNANQWLGATALSMASYPANAALPNPMLSWMAAWGQVTERSFERMVT
CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHC
KPDWGIPATTLPDGKDHLVEVDTIVEKPFGDLIHFRVTDRAEQPRKVLVVAPMSGHYATL
CCCCCCCCCCCCCCCHHEEEHHHHHHCCCCCEEEEEECCCCCCCCEEEEEECCCCHHHHH
LRSMVKSLIENCEVYVTDWHNARDIPVSAGKFDVEDYTLYLVEFMRELGPDTHVVAVCQP
HHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECC
APLTLAATAYLAEIDPKAQPSSLTLIGGPVDPDATPTDVTDFGRRVTMGQLEQTMIQRVG
CCCHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHCC
FKYKGVGRKVYPGLLQLASFMSMNMDRHSKAFSEQIMRVCRGEATDHDAHNRFYDEYLAV
CCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH
MDMPAEFYLSTVERVFKQREIAQNAFTVQGHKIDIGKITDVAVKTVEGSKDDISAPGQCI
HCCCHHHHHHHHHHHHHHHHHHHCCEEECCCEEECCCCCHHHEEECCCCCCCCCCCHHHH
AALDLCTGLPDSKKASHVEPGAGHYGIFAGRSWRNNIRPLVIDFMDANARQPVRKQPKKT
HHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCEEEEEEECCCCCCCHHHCCHHH
AAK
CCC
>Mature Secondary Structure
MRYMMSYDLMETVRNANQWLGATALSMASYPANAALPNPMLSWMAAWGQVTERSFERMVT
CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHC
KPDWGIPATTLPDGKDHLVEVDTIVEKPFGDLIHFRVTDRAEQPRKVLVVAPMSGHYATL
CCCCCCCCCCCCCCCHHEEEHHHHHHCCCCCEEEEEECCCCCCCCEEEEEECCCCHHHHH
LRSMVKSLIENCEVYVTDWHNARDIPVSAGKFDVEDYTLYLVEFMRELGPDTHVVAVCQP
HHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECC
APLTLAATAYLAEIDPKAQPSSLTLIGGPVDPDATPTDVTDFGRRVTMGQLEQTMIQRVG
CCCHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHCC
FKYKGVGRKVYPGLLQLASFMSMNMDRHSKAFSEQIMRVCRGEATDHDAHNRFYDEYLAV
CCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH
MDMPAEFYLSTVERVFKQREIAQNAFTVQGHKIDIGKITDVAVKTVEGSKDDISAPGQCI
HCCCHHHHHHHHHHHHHHHHHHHCCEEECCCEEECCCCCHHHEEECCCCCCCCCCCHHHH
AALDLCTGLPDSKKASHVEPGAGHYGIFAGRSWRNNIRPLVIDFMDANARQPVRKQPKKT
HHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCEEEEEEECCCCCCCHHHCCHHH
AAK
CCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA