| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is 99081513
Identifier: 99081513
GI number: 99081513
Start: 1772661
End: 1773068
Strand: Reverse
Name: 99081513
Synonym: TM1040_1672
Alternate gene names: NA
Gene position: 1773068-1772661 (Counterclockwise)
Preceding gene: 99081515
Following gene: 99081512
Centisome position: 55.39
GC content: 62.75
Gene sequence:
>408_bases ATGACCCGCATCCAGCGCCCCCGATATGACGATGTTTTCGCCGGTCACGACGAGGGCGGGCCGATGGCTGAGCAGGCCAA AGTGCTCTGGGAGGAATACAAGGCCGACCTTGAGGCTCGTGGGCTTTGGAACCGGGCGCGTGCGCGGACACTGGACCGGC TGGTGCGCATGACTGCCGAATATCTGCATTATCAGCCGCTGGCTGTGGCGCAGGGGCCGGTGCGGGAGAGTGGCGACGGC GGGCAGTACGTGAACATGCTCTGGTCGCAAGTGAAGAACATGGCCGAGCAGATCGGCAAGCTGGAAAAGGCGCTCACGCT GACGCCTGAGAGCGTAGGCGCAAAAGCAGAGGCGCCGAAGAAGACACCGGAAAAGACGGCAGCAGATGAGTTCCTCGGAG CGCATTGA
Upstream 100 bases:
>100_bases GAGGGTAGGGGGGGGGAGGTCCAAAGTTCAGGCCTCCACACTGGAAACCTATCGCCGGTCCTCCGTGCGCAATATCTGCT CCCGAAAGTAGGGGTGTCCC
Downstream 100 bases:
>100_bases CCAGACCACGCGATACGCGCGGGATGTGGTTTCGGGAAAGATCGTAGCGGGCGCATTCGTGCGGGCGCAATGCCAGCGGC ACCTAGATGATCTGAAGCAT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 135; Mature: 134
Protein sequence:
>135_residues MTRIQRPRYDDVFAGHDEGGPMAEQAKVLWEEYKADLEARGLWNRARARTLDRLVRMTAEYLHYQPLAVAQGPVRESGDG GQYVNMLWSQVKNMAEQIGKLEKALTLTPESVGAKAEAPKKTPEKTAADEFLGAH
Sequences:
>Translated_135_residues MTRIQRPRYDDVFAGHDEGGPMAEQAKVLWEEYKADLEARGLWNRARARTLDRLVRMTAEYLHYQPLAVAQGPVRESGDG GQYVNMLWSQVKNMAEQIGKLEKALTLTPESVGAKAEAPKKTPEKTAADEFLGAH >Mature_134_residues TRIQRPRYDDVFAGHDEGGPMAEQAKVLWEEYKADLEARGLWNRARARTLDRLVRMTAEYLHYQPLAVAQGPVRESGDGG QYVNMLWSQVKNMAEQIGKLEKALTLTPESVGAKAEAPKKTPEKTAADEFLGAH
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 15126; Mature: 14995
Theoretical pI: Translated: 6.81; Mature: 6.81
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.7 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTRIQRPRYDDVFAGHDEGGPMAEQAKVLWEEYKADLEARGLWNRARARTLDRLVRMTAE CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH YLHYQPLAVAQGPVRESGDGGQYVNMLWSQVKNMAEQIGKLEKALTLTPESVGAKAEAPK HHHCCCHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCC KTPEKTAADEFLGAH CCCCHHHHHHHHCCC >Mature Secondary Structure TRIQRPRYDDVFAGHDEGGPMAEQAKVLWEEYKADLEARGLWNRARARTLDRLVRMTAE CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH YLHYQPLAVAQGPVRESGDGGQYVNMLWSQVKNMAEQIGKLEKALTLTPESVGAKAEAPK HHHCCCHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCC KTPEKTAADEFLGAH CCCCHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA