| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is 99081479
Identifier: 99081479
GI number: 99081479
Start: 1742974
End: 1743864
Strand: Reverse
Name: 99081479
Synonym: TM1040_1638
Alternate gene names: NA
Gene position: 1743864-1742974 (Counterclockwise)
Preceding gene: 99081486
Following gene: 99081476
Centisome position: 54.48
GC content: 50.39
Gene sequence:
>891_bases ATGCGAAATGCACTCTTTGTGAGGTCATTCATGTTGCTGCTCTCCGTCTGTATGGACGCGAGGCTAGTGACCAATATGGT CATCGTCAATAACAAAAATGACCAAAAAGGTCATAATGAGAGTCCAGTATGGTCTCACAGTATCCTGCGAGTGTCAGACT CAATGCGATGCTGTATAAGGGCAAGTATTGACGGAGAGGCGGAAAATTTAATGACTGAGCATGTGTTTAGCTTGGTTTCG GCGATTAATGCCAGGATGGATCGGTTGCGCTCCAGGGGGTGTGAATTAGCTGTTACTCACGATTTTGAGGATGCCGCTCG GCGACTTGAGGCTGTAGGGAAGCCATACCTAACTCCATCGCTATCGTTTGCATGGAACGATTTCACCCGTGATTCATGCT TTTGGGTGTCATTGGCTCTCGAGGGCGACGTCATGGGGGCTGCAGGTGTAAAGAGGGAGGTACTGAATGGGGAGCCGATA TCAAGTTACTGGAGGCGCAGTCTAAAGAGGCAGTATCCGCGCGATGATGGCGCTGATGTGATTTCTTCGGTGTCGCCTCT TGTTGACCTCAGTCTTGGTGGAGAGTTGGCATATTTTGGGGACCTCTATTTTCATCCCAAACTTCGGGAATTGAGGGTGT TAGAGGATTTTGGGCGAGTGGTGCTTTATCACGCTGCACTCAGTTTTCGTGTTCAGACCTTCTATGCGTTTTTAAAGGAT CGGGATTTGCGTCGTGGCTTTGGGTTTCAATTGGGCTTGATGTCCTGCATTCCGCAGGCTCAGGTTTGGTCTCAGCCCTT CCCAGAAGGCAGGGGTAGTCACGAGGCTTGCTGCTTCTCGCGGCGTGATCAAGTGCTGGAGTTGGCGCGACTAGACGCTG GTATTGCATAG
Upstream 100 bases:
>100_bases GTTTGAGGTGCGCATGTCCTGACCGCGTTGCGCTTTCAGTTCTGCCCAAGCGGTTTGAAACACTTCGGGAGTTTCACTGT GGTCCTCGGGGGTGCTGAGG
Downstream 100 bases:
>100_bases ACGCCGACGGCTGGTTTGCCATTGAAATCTTTGACCGGGAATAGCAGGCGCTTATACATGAGTTCGTTTACTTCGGGCTG GCCGTGCACGTGTGTTGCAA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 296; Mature: 296
Protein sequence:
>296_residues MRNALFVRSFMLLLSVCMDARLVTNMVIVNNKNDQKGHNESPVWSHSILRVSDSMRCCIRASIDGEAENLMTEHVFSLVS AINARMDRLRSRGCELAVTHDFEDAARRLEAVGKPYLTPSLSFAWNDFTRDSCFWVSLALEGDVMGAAGVKREVLNGEPI SSYWRRSLKRQYPRDDGADVISSVSPLVDLSLGGELAYFGDLYFHPKLRELRVLEDFGRVVLYHAALSFRVQTFYAFLKD RDLRRGFGFQLGLMSCIPQAQVWSQPFPEGRGSHEACCFSRRDQVLELARLDAGIA
Sequences:
>Translated_296_residues MRNALFVRSFMLLLSVCMDARLVTNMVIVNNKNDQKGHNESPVWSHSILRVSDSMRCCIRASIDGEAENLMTEHVFSLVS AINARMDRLRSRGCELAVTHDFEDAARRLEAVGKPYLTPSLSFAWNDFTRDSCFWVSLALEGDVMGAAGVKREVLNGEPI SSYWRRSLKRQYPRDDGADVISSVSPLVDLSLGGELAYFGDLYFHPKLRELRVLEDFGRVVLYHAALSFRVQTFYAFLKD RDLRRGFGFQLGLMSCIPQAQVWSQPFPEGRGSHEACCFSRRDQVLELARLDAGIA >Mature_296_residues MRNALFVRSFMLLLSVCMDARLVTNMVIVNNKNDQKGHNESPVWSHSILRVSDSMRCCIRASIDGEAENLMTEHVFSLVS AINARMDRLRSRGCELAVTHDFEDAARRLEAVGKPYLTPSLSFAWNDFTRDSCFWVSLALEGDVMGAAGVKREVLNGEPI SSYWRRSLKRQYPRDDGADVISSVSPLVDLSLGGELAYFGDLYFHPKLRELRVLEDFGRVVLYHAALSFRVQTFYAFLKD RDLRRGFGFQLGLMSCIPQAQVWSQPFPEGRGSHEACCFSRRDQVLELARLDAGIA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 33484; Mature: 33484
Theoretical pI: Translated: 7.44; Mature: 7.44
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.7 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 5.7 %Cys+Met (Translated Protein) 2.7 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 5.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRNALFVRSFMLLLSVCMDARLVTNMVIVNNKNDQKGHNESPVWSHSILRVSDSMRCCIR CCCHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCCCCCCCCHHHHHHHHCCCCEEEEE ASIDGEAENLMTEHVFSLVSAINARMDRLRSRGCELAVTHDFEDAARRLEAVGKPYLTPS ECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHCCCCCCCC LSFAWNDFTRDSCFWVSLALEGDVMGAAGVKREVLNGEPISSYWRRSLKRQYPRDDGADV CCCCCCCCCCCCEEEEEEEECCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHCCCCCCHHH ISSVSPLVDLSLGGELAYFGDLYFHPKLRELRVLEDFGRVVLYHAALSFRVQTFYAFLKD HHHHHHHHHHCCCCCEEEECCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC RDLRRGFGFQLGLMSCIPQAQVWSQPFPEGRGSHEACCFSRRDQVLELARLDAGIA CHHHHCCCHHHHHHHHCCCHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure MRNALFVRSFMLLLSVCMDARLVTNMVIVNNKNDQKGHNESPVWSHSILRVSDSMRCCIR CCCHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCCCCCCCCHHHHHHHHCCCCEEEEE ASIDGEAENLMTEHVFSLVSAINARMDRLRSRGCELAVTHDFEDAARRLEAVGKPYLTPS ECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHCCCCCCCC LSFAWNDFTRDSCFWVSLALEGDVMGAAGVKREVLNGEPISSYWRRSLKRQYPRDDGADV CCCCCCCCCCCCEEEEEEEECCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHCCCCCCHHH ISSVSPLVDLSLGGELAYFGDLYFHPKLRELRVLEDFGRVVLYHAALSFRVQTFYAFLKD HHHHHHHHHHCCCCCEEEECCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC RDLRRGFGFQLGLMSCIPQAQVWSQPFPEGRGSHEACCFSRRDQVLELARLDAGIA CHHHHCCCHHHHHHHHCCCHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA